InputData.h
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上传日期:2022-04-05
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- /*
- FastGrid (formerly AutoGrid)
- Copyright (C) 2009 The Scripps Research Institute. All rights reserved.
- Copyright (C) 2009 Masaryk University. All rights reserved.
- AutoGrid is a Trade Mark of The Scripps Research Institute.
- This program is free software; you can redistribute it and/or
- modify it under the terms of the GNU General Public License
- as published by the Free Software Foundation; either version 2
- of the License, or (at your option) any later version.
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
- You should have received a copy of the GNU General Public License
- along with this program; if not, write to the Free Software
- Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
- */
- #pragma once
- #include "ParameterLibrary.h"
- struct InputData
- {
- // Filenames
- // if the first char is equal to ' ', the filename is not specified
- char fldFilenameAVS[MAX_CHARS];
- char floatingGridFilename[MAX_CHARS];
- char receptorFilename[MAX_CHARS];
- char xyzFilename[MAX_CHARS];
- char parameterLibraryFilename[MAX_CHARS]; // the AD4 parameters .dat file name
- // Grid
- int numGridPointsPerMap; // for the entire grid
- Vec3i numGridPoints; // in one axis
- Vec3i numGridPointsDiv2; // in one axis
- Vec3d gridCornerMin; // corner of the grid (minimal coordinates)
- Vec3d gridCenter; // center of mass where the grid is centered on
- double gridSpacing; // One quarter of a C-C bond length.
- // variables for RECEPTOR:
- // each type is now at most two characters, eg 'NA '
- // NB: these are sparse arrays, some entries are not set
- char receptorTypes[NUM_RECEPTOR_TYPES][3];
- int numReceptorTypes; // number of different receptor atom types actually found in receptor PDBQT
- int numReceptorAtoms;
- // length of these arrays is equal to InputData::numReceptorAtoms
- double *charge;
- double *vol;
- double *solpar;
- int *atomType;
- HBondType *hbond;
- Vec4d *receptorAtom; // XYZ = coord, W = charge * coeff_estat * (distDepDiel ? 1 : invDielCal)
- double epsilon[MAX_DIST];
- // for NEW3 desolvation terms
- double solparQ; // unweighted value restored 3:9:05
- double invDielCal;
- double rSmooth;
- double covHalfWidthSquaredInv;
- double covBarrier;
- Vec3d covalentPoint; // Cartesian-coordinate of covalent affinity well.
- bool distDepDiel, disorderH;
-
- virtual ~InputData() {}
- };