feat_config.cpp
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- /*
- * ===========================================================================
- * PRODUCTION $Log: feat_config.cpp,v $
- * PRODUCTION Revision 1000.3 2004/06/01 20:43:11 gouriano
- * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.12
- * PRODUCTION
- * ===========================================================================
- */
- /* $Id: feat_config.cpp,v 1000.3 2004/06/01 20:43:11 gouriano Exp $
- * ===========================================================================
- *
- * PUBLIC DOMAIN NOTICE
- * National Center for Biotechnology Information
- *
- * This software/database is a "United States Government Work" under the
- * terms of the United States Copyright Act. It was written as part of
- * the author's official duties as a United States Government employee and
- * thus cannot be copyrighted. This software/database is freely available
- * to the public for use. The National Library of Medicine and the U.S.
- * Government have not placed any restriction on its use or reproduction.
- *
- * Although all reasonable efforts have been taken to ensure the accuracy
- * and reliability of the software and data, the NLM and the U.S.
- * Government do not and cannot warrant the performance or results that
- * may be obtained by using this software or data. The NLM and the U.S.
- * Government disclaim all warranties, express or implied, including
- * warranties of performance, merchantability or fitness for any particular
- * purpose.
- *
- * Please cite the author in any work or product based on this material.
- *
- * ===========================================================================
- *
- * Authors: Robert Smith
- *
- */
- /// @file feat_config.cpp
- ///
- /// Utilities to configure preferences for viewing SeqFeats.
- #include <ncbi_pch.hpp>
- #include <gui/config/feat_config.hpp>
- BEGIN_NCBI_SCOPE
- /// This returns a string in response to any key if there is nothing
- /// for that key in the PluginConfigCache. Hence it works closely
- /// with LoadCurrentSettings below.
- // const string CFeatConfigFactoryDefaults::kNotDefined("#NOT Defined#");
- const string CFeatConfigFactoryDefaults::kTrueStr("true");
- const string CFeatConfigFactoryDefaults::kFalseStr("false");
- string CFeatConfigFactoryDefaults::Get(const string& key) const
- {
- string key1, key2;
- NStr::SplitInTwo(key, "|", key1, key2);
- if (key1 == "color") {
- if (key2 == "Master") {
- return CRgbaColor::ColorStrFromName("black");
- } else if (key2 == "Gene") {
- return CRgbaColor::ColorStrFromName("green");
- } else if (key2 == "RNA Master") {
- return CRgbaColor::ColorStrFromName("blue");
- } else if (key2 == "CDS") {
- return CRgbaColor::ColorStrFromName("red");
- } else if (key2 == "repeat_region") {
- return CRgbaColor::ColorStrFromName("blue");
- }
- } else if (key == "show|Master") {
- return kTrueStr;
- }
- NCBI_THROW(CConfigException, eNoDefaultValue, "key: " + key);
- }
- // definitions for CFeatConfig
- /// use this cstr when declaring a CFeatConfig object.
- CFeatConfig::CFeatConfig(objects::CPluginConfigCache* config_cache)
- : CSettingsSet(config_cache, "features",
- new CFeatConfigFactoryDefaults()),
- m_FeatList(*GetFeatConfigList())
- {
- LoadCurrentSettings(eLoad_Current);
- }
- /// use this cstr when initializing a CFeatConfig object as a parent object
- /// in an inherited class, since it will probably need a different type
- /// and factory defaults. But the FactoryDefaultSettings object pass in to here
- /// should probably inherit from CFeatConfigFactoryDefaults.
- CFeatConfig::CFeatConfig(objects::CPluginConfigCache* config_cache,
- const string& type,
- const AutoPtr<IFactoryDefaultSettings>& fds)
- : CSettingsSet(config_cache, type, fds),
- m_FeatList(*GetFeatConfigList())
- {
- LoadCurrentSettings(eLoad_Current);
- }
- bool CFeatConfig::LoadCurrentSettings(ELoadValueSource src)
- {
- /// iterate through all feature types.
- /// if we Get a "Not Defined" string, do not set anything for
- /// that value, for the feature type.
- /// Else set a real value and set Inherited to false.
-
- string featvaluestr;
-
- ClearColors();
- ClearShows();
-
- ITERATE ( CFeatConfig, fc_it, *this ) {
- int myType = fc_it->GetType();
- int mySubtype = fc_it->GetSubtype();
-
- try {
- featvaluestr = Get("color" + GetKeyDelimiter() + fc_it->GetStoragekey(), src);
- SetColor( myType, mySubtype, CGlColor(featvaluestr));
- SetColorInherited( myType, mySubtype, false);
- }
- catch (const CConfigException&) {
- }
-
- try {
- featvaluestr = Get("show" + GetKeyDelimiter() + fc_it->GetStoragekey(), src);
- SetShow( myType, mySubtype, NStr::StringToBool(featvaluestr));
- SetShowInherited( myType, mySubtype, false);
- }
- catch (const CConfigException&) {
- }
- }
-
- return true;
- }
- bool CFeatConfig::SaveCurrentSettings(void)
- {
- // iterate through all feature types.
- // if features color/show/etc. value is not inherited
- // save it as a string.
- // If it is inherited, or no value is defined for that feature type,
- // we do not save it and make sure there is not an entry with that key.
-
- ITERATE(CFeatConfigList, fc_it, m_FeatList) {
- int myType = fc_it->GetType();
- int mySubtype = fc_it->GetSubtype();
-
- if ( ! m_FeatColors.GetInherited(myType, mySubtype)) {
- Set("color" + GetKeyDelimiter() + fc_it->GetStoragekey(),
- GetColor(myType, mySubtype).ToString(false) );
- } else {
- Delete("color" + GetKeyDelimiter() + fc_it->GetStoragekey());
- }
-
- if ( ! m_FeatShows.GetInherited(myType, mySubtype)) {
- Set("show" + GetKeyDelimiter() + fc_it->GetStoragekey(),
- NStr::BoolToString(GetShow(myType, mySubtype)) );
- } else {
- Delete("show" + GetKeyDelimiter() + fc_it->GetStoragekey());
- }
- }
-
- return true;
- }
- void CFeatConfig::GetFeatureDescs(vector<string>& names) const
- {
- names.clear();
- ITERATE (CFeatConfigList, iter, m_FeatList) {
- names.push_back(iter->GetDescription());
- }
- }
- bool CFeatConfig::GetTypeSubType(const string& desc, int& type, int& subtype) const
- {
- CFeatConfigItem config_item;
- if ( m_FeatList.GetItemByDescription(desc, config_item) ) {
- type = config_item.GetType();
- subtype = config_item.GetSubtype();
- return true;
- }
- return false;
- }
- size_t CFeatConfig::size() const
- {
- return m_FeatList.size();
- }
- CFeatConfig::const_iterator CFeatConfig::begin() const
- {
- return m_FeatList.begin();
- }
- CFeatConfig::const_iterator CFeatConfig::end() const
- {
- return m_FeatList.end();
- }
- bool CFeatConfig::GetShow(int type, int subtype) const
- {
- return m_FeatShows.GetValue(type, subtype);
- }
- void CFeatConfig::SetShow(int type, int subtype, bool show)
- {
- m_FeatShows.SetValue(type, subtype, show);
- }
- void CFeatConfig::SetShowInherited(int type, int subtype, bool inherited)
- {
- m_FeatShows.SetInherited(type, subtype, inherited);
- }
- void CFeatConfig::SetShows(const CFeatConfigValues<bool>& o)
- {
- m_FeatShows = o;
- }
- const CFeatConfigValues<bool>&
- CFeatConfig::GetShows() const
- {
- return m_FeatShows;
- }
- void CFeatConfig::ClearShows()
- {
- m_FeatShows.ClearValues();
- }
- CGlColor CFeatConfig::GetColor(int type, int subtype) const
- {
- return m_FeatColors.GetValue(type, subtype);
- }
- void CFeatConfig::SetColor(int type, int subtype, CGlColor color)
- {
- m_FeatColors.SetValue(type, subtype, color);
- }
- void CFeatConfig::SetColors(const CFeatConfigValues<CGlColor>& o)
- {
- m_FeatColors = o;
- }
- const CFeatConfigValues<CGlColor>&
- CFeatConfig::GetColors() const
- {
- return m_FeatColors;
- }
- void CFeatConfig::SetColorInherited(int type, int subtype, bool inherited)
- {
- m_FeatColors.SetInherited(type, subtype, inherited);
- }
- void CFeatConfig::ClearColors()
- {
- m_FeatColors.ClearValues();
- }
- END_NCBI_SCOPE
- /*
- * ===========================================================================
- * $Log: feat_config.cpp,v $
- * Revision 1000.3 2004/06/01 20:43:11 gouriano
- * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.12
- *
- * Revision 1.12 2004/05/21 22:27:39 gorelenk
- * Added PCH ncbi_pch.hpp
- *
- * Revision 1.11 2004/05/20 12:27:41 dicuccio
- * Removed unnecessary doxygen module directives - they're in the headers
- *
- * Revision 1.10 2003/12/30 15:00:30 dicuccio
- * Fixed compiler warnings on MSVC
- *
- * Revision 1.9 2003/12/29 14:43:29 rsmith
- * Get returns string not string&. Take out stuff now in separate files.
- *
- * Revision 1.8 2003/11/21 12:49:12 rsmith
- * Add ability to delete values by key.
- *
- * Revision 1.7 2003/11/18 20:22:57 rsmith
- * Any -> Master, get/set all Show and Color values at once.
- *
- * Revision 1.6 2003/10/30 14:23:39 rsmith
- * Add cstr for use as a base class, and static value strings.
- *
- * Revision 1.5 2003/10/28 19:02:17 dicuccio
- * Changed ctor parameter for config cache from CRef<> to raw pointer
- *
- * Revision 1.4 2003/10/28 13:43:41 rsmith
- * Expose feature list's size().
- *
- * Revision 1.3 2003/10/27 19:29:14 rsmith
- * Expose iterators on CFeatConfigItem in CFeatConfig
- *
- * Revision 1.2 2003/10/24 14:49:50 rsmith
- * CFeatConfig -> CFeatConfigList, CFeatConfig now contains a CFeatConfigList,
- * several methods added.
- *
- * Revision 1.1 2003/10/17 19:45:01 rsmith
- * configuration information for SeqFeats. Replaces config_items.cpp
- *
- *
- * Log below was from config_items.cpp which this file replaced.
- *
- * Revision 1.3 2003/10/16 16:29:58 rsmith
- * change implementation to use a set not a map, so that the iterators would
- * return CFeatConfigItem not a pair.
- *
- * Revision 1.2 2003/10/10 19:37:03 dicuccio
- * Reqorked static initializer to use struct constructors
- *
- * Revision 1.1 2003/10/10 17:43:42 rsmith
- * moved from gui/core to gui/config
- *
- * ===========================================================================
- */