blast_base.hpp
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- /*
- * ===========================================================================
- * PRODUCTION $Log: blast_base.hpp,v $
- * PRODUCTION Revision 1000.2 2004/04/12 19:27:15 gouriano
- * PRODUCTION PRODUCTION: UPGRADED [CATCHUP_003] Dev-tree R1.3
- * PRODUCTION
- * ===========================================================================
- */
- #ifndef GUI_PLUGINS_ALGO_BLAST___BLAST_BASE__HPP
- #define GUI_PLUGINS_ALGO_BLAST___BLAST_BASE__HPP
- /* $Id: blast_base.hpp,v 1000.2 2004/04/12 19:27:15 gouriano Exp $
- * ===========================================================================
- *
- * PUBLIC DOMAIN NOTICE
- * National Center for Biotechnology Information
- *
- * This software/database is a "United States Government Work" under the
- * terms of the United States Copyright Act. It was written as part of
- * the author's official duties as a United States Government employee and
- * thus cannot be copyrighted. This software/database is freely available
- * to the public for use. The National Library of Medicine and the U.S.
- * Government have not placed any restriction on its use or reproduction.
- *
- * Although all reasonable efforts have been taken to ensure the accuracy
- * and reliability of the software and data, the NLM and the U.S.
- * Government do not and cannot warrant the performance or results that
- * may be obtained by using this software or data. The NLM and the U.S.
- * Government disclaim all warranties, express or implied, including
- * warranties of performance, merchantability or fitness for any particular
- * purpose.
- *
- * Please cite the author in any work or product based on this material.
- *
- * ===========================================================================
- *
- * Authors: Mike DiCuccio
- *
- * File Description:
- *
- */
- #include <corelib/ncbistd.hpp>
- #include <gui/core/algo.hpp>
- #include <gui/core/plugin_utils.hpp>
- BEGIN_NCBI_SCOPE
- class CAlgoBlast_Base
- {
- public:
- virtual ~CAlgoBlast_Base() {}
- // internal handler for RunCommand(), called by derived classes
- void RunCommand(objects::CPluginMessage& msg);
- protected:
- // standard BLAST options hook. This is called by derived
- // classes GetInfo() functions to add the basic information for
- // local BLAST searches
- static void x_AddStandardArgs(objects::CPluginCommand& command);
- };
- END_NCBI_SCOPE
- /*
- * ===========================================================================
- * $Log: blast_base.hpp,v $
- * Revision 1000.2 2004/04/12 19:27:15 gouriano
- * PRODUCTION: UPGRADED [CATCHUP_003] Dev-tree R1.3
- *
- * Revision 1.3 2004/01/27 18:40:06 dicuccio
- * Code clean-up. Renamed plugin classes to follow standard pattern
- *
- * Revision 1.2 2003/11/04 17:49:22 dicuccio
- * Changed calling parameters for plugins - pass CPluginMessage instead of paired
- * CPluginCommand/CPluginReply
- *
- * Revision 1.1 2003/10/23 16:23:04 dicuccio
- * Moved code from algo/blast to algo/align
- *
- * Revision 1.2 2003/09/29 19:28:01 dicuccio
- * Implemented variants of BLAST
- *
- * Revision 1.1 2003/09/25 17:41:10 dicuccio
- * Split BLAST plugin into three plugins, one each for BLASTn, BLASTp, and tBLASTn
- *
- * Revision 1.2 2003/08/22 15:47:46 dicuccio
- * Added 'objects::' where necessary
- *
- * Revision 1.1 2003/08/15 18:59:14 dicuccio
- * Initial revision
- *
- * ===========================================================================
- */
- #endif // GUI_PLUGINS_ALGO_BLAST___BLAST_BASE__HPP