blast_util.hpp
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上传日期:2007-06-13
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- /*
- * ===========================================================================
- * PRODUCTION $Log: blast_util.hpp,v $
- * PRODUCTION Revision 1000.1 2004/04/16 17:50:11 gouriano
- * PRODUCTION PRODUCTION: UPGRADED [CATCHUP_003] Dev-tree R1.2
- * PRODUCTION
- * ===========================================================================
- */
- #ifndef GUI_PLUGINS_ALGO_ALIGN___BLAST_UTIL__HPP
- #define GUI_PLUGINS_ALGO_ALIGN___BLAST_UTIL__HPP
- /* $Id: blast_util.hpp,v 1000.1 2004/04/16 17:50:11 gouriano Exp $
- * ===========================================================================
- *
- * PUBLIC DOMAIN NOTICE
- * National Center for Biotechnology Information
- *
- * This software/database is a "United States Government Work" under the
- * terms of the United States Copyright Act. It was written as part of
- * the author's official duties as a United States Government employee and
- * thus cannot be copyrighted. This software/database is freely available
- * to the public for use. The National Library of Medicine and the U.S.
- * Government have not placed any restriction on its use or reproduction.
- *
- * Although all reasonable efforts have been taken to ensure the accuracy
- * and reliability of the software and data, the NLM and the U.S.
- * Government do not and cannot warrant the performance or results that
- * may be obtained by using this software or data. The NLM and the U.S.
- * Government disclaim all warranties, express or implied, including
- * warranties of performance, merchantability or fitness for any particular
- * purpose.
- *
- * Please cite the author in any work or product based on this material.
- *
- * ===========================================================================
- *
- * Authors: Mike DiCuccio
- *
- * File Description:
- *
- */
- #include <algo/blast/api/blast_options.hpp>
- #include <gui/plugin/PluginCommand.hpp>
- BEGIN_NCBI_SCOPE
- class CBlastUtils
- {
- public:
- static void AddBlastArgs(objects::CPluginCommand& cmd,
- blast::EProgram prog);
- static void ArgsToBlastOptions(const objects::CPluginCommand& args,
- blast::CBlastOptions& opts);
- // retrieve the blast program from a string-based encoding
- static blast::EProgram GetBlastProgram(const string& str);
- };
- END_NCBI_SCOPE
- /*
- * ===========================================================================
- * $Log: blast_util.hpp,v $
- * Revision 1000.1 2004/04/16 17:50:11 gouriano
- * PRODUCTION: UPGRADED [CATCHUP_003] Dev-tree R1.2
- *
- * Revision 1.2 2004/04/16 14:41:22 dicuccio
- * Added GetBlastProgram() - convert text-based program name to enum
- *
- * Revision 1.1 2004/01/13 20:35:27 dicuccio
- * Initial revision
- *
- * ===========================================================================
- */
- #endif // GUI_PLUGINS_ALGO_ALIGN___BLAST_UTIL__HPP