viewer.cpp
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- /*
- * ===========================================================================
- * PRODUCTION $Log: viewer.cpp,v $
- * PRODUCTION Revision 1000.4 2004/06/01 20:56:55 gouriano
- * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.7
- * PRODUCTION
- * ===========================================================================
- */
- /* $Id: viewer.cpp,v 1000.4 2004/06/01 20:56:55 gouriano Exp $
- * ===========================================================================
- *
- * PUBLIC DOMAIN NOTICE
- * National Center for Biotechnology Information
- *
- * This software / database is a "United States Government Work" under the
- * terms of the United States Copyright Act. It was written as part of
- * the author's official duties as a United States Government employee and
- * thus cannot be copyrighted. This software / database is freely available
- * to the public for use. The National Library of Medicine and the U.S.
- * Government have not placed any restriction on its use or reproduction.
- *
- * Although all reasonable efforts have been taken to ensure the accuracy
- * and reliability of the software and data, the NLM and the U.S.
- * Government do not and cannot warrant the performance or results that
- * may be obtained by using this software or data. The NLM and the U.S.
- * Government disclaim all warranties, express or implied, including
- * warranties of performance, merchantability or fitness for any particular
- * purpose.
- *
- * Please cite the author in any work or product based on this material.
- *
- * ===========================================================================
- *
- * Authors: Mike DiCuccio
- *
- * File Description:
- *
- */
- #include <ncbi_pch.hpp>
- #include "viewer.hpp"
- #include <gui/plugin/PluginInfo.hpp>
- #include <gui/plugin/PluginRequest.hpp>
- #include <gui/plugin/PluginCommand.hpp>
- #include <gui/plugin/PluginCommandSet.hpp>
- #include <gui/plugin/PluginArgSet.hpp>
- #include <gui/plugin/PluginArg.hpp>
- #include <gui/core/version.hpp>
- #include <gui/core/idocument.hpp>
- #include <gui/core/plugin_utils.hpp>
- #include <gui/utils/app_popup.hpp>
- #include <corelib/ncbiapp.hpp>
- #include <corelib/ncbireg.hpp>
- #include <objmgr/util/feature.hpp>
- #include <objmgr/util/sequence.hpp>
- BEGIN_NCBI_SCOPE
- USING_SCOPE(ncbi::objects);
- // standard info boilerplate
- void CAlgoLinkOut_Viewer::GetInfo(CPluginInfo& info)
- {
- info.Reset();
- // version info macro
- info.SetInfo(CPluginVersion::eMajor, CPluginVersion::eMinor, 0,
- string(__DATE__) + " " + string(__TIME__),
- "CAlgoLinkOut_Viewer",
- "Link Out/View sequence in NCBI Web Viewer",
- "View this sequence on the NCBI Web Site", "");
- // command info
- CPluginCommandSet& cmds = info.SetCommands();
- CPluginCommand& args = cmds.AddAlgoCommand(eAlgoCommand_run);
- args.AddArgument("seq-id", "Sequence ID to view",
- CSeq_id::GetTypeInfo());
- }
- // run our plugin
- void CAlgoLinkOut_Viewer::RunCommand(CPluginMessage& msg)
- {
- const CPluginCommand& args = msg.GetRequest().GetCommand();
- CPluginReply& reply = msg.SetReply();
- plugin_args::TIdList ids;
- GetArgValue(args["seq-id"], ids);
- const CSeq_id& id = *ids.front().second;
- const IDocument& doc = *ids.front().first;
- // retrieve the default link for Viewer
- CNcbiApplication* app = CNcbiApplication::Instance();
- _ASSERT(app);
- const CNcbiRegistry& reg = app->GetConfig();
- string viewer_url =
- reg.GetString("LINKOUT", "Viewer",
- "http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi"
- "?val=<gi>");
- //
- // get gi from id
- //
- string id_str;
- if ( id.IsGi() ) {
- id_str = NStr::IntToString(id.GetGi());
- } else {
- CBioseq_Handle handle = doc.GetScope().GetBioseqHandle(id);
- if ( !handle ) {
- reply.SetStatus(eMessageStatus_failed);
- return;
- }
- const CSeq_id& gi_id =
- sequence::GetId(handle, sequence::eGetId_ForceGi);
- id_str = NStr::IntToString(gi_id.GetGi());
- }
- //
- // finalize our URL and launch!
- //
- viewer_url = NStr::Replace(viewer_url, "<gi>", id_str);
- if ( !CAppPopup::PopupURL(viewer_url) ) {
- reply.SetStatus(eMessageStatus_failed);
- } else {
- reply.SetStatus(eMessageStatus_success);
- }
- }
- END_NCBI_SCOPE
- /*
- * ===========================================================================
- * $Log: viewer.cpp,v $
- * Revision 1000.4 2004/06/01 20:56:55 gouriano
- * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.7
- *
- * Revision 1.7 2004/05/21 22:27:48 gorelenk
- * Added PCH ncbi_pch.hpp
- *
- * Revision 1.6 2004/03/05 17:36:08 dicuccio
- * Use sequence::GetId() instead of CSeq_id::GetStringDescr()
- *
- * Revision 1.5 2004/01/27 18:45:28 dicuccio
- * Added missing header files
- *
- * Revision 1.4 2003/11/24 15:45:31 dicuccio
- * Renamed CVersion to CPluginVersion
- *
- * Revision 1.3 2003/11/04 17:49:24 dicuccio
- * Changed calling parameters for plugins - pass CPluginMessage instead of paired
- * CPluginCommand/CPluginReply
- *
- * Revision 1.2 2003/09/29 15:37:13 dicuccio
- * Added more informative menu string
- *
- * Revision 1.1 2003/09/23 19:45:45 dicuccio
- * Initial revision
- *
- * ===========================================================================
- */