English
- /*
- * ===========================================================================
- * PRODUCTION $Log: prot_product.cpp,v $
- * PRODUCTION Revision 1000.0 2004/06/01 21:21:06 gouriano
- * PRODUCTION PRODUCTION: IMPORTED [GCC34_MSVC7] Dev-tree R1.2
- * PRODUCTION
- * ===========================================================================
- */
- /* $Id: prot_product.cpp,v 1000.0 2004/06/01 21:21:06 gouriano Exp $
- * ===========================================================================
- *
- * PUBLIC DOMAIN NOTICE
- * National Center for Biotechnology Information
- *
- * This software/database is a "United States Government Work" under the
- * terms of the United States Copyright Act. It was written as part of
- * the author's official duties as a United States Government employee and
- * thus cannot be copyrighted. This software/database is freely available
- * to the public for use. The National Library of Medicine and the U.S.
- * Government have not placed any restriction on its use or reproduction.
- *
- * Although all reasonable efforts have been taken to ensure the accuracy
- * and reliability of the software and data, the NLM and the U.S.
- * Government do not and cannot warrant the performance or results that
- * may be obtained by using this software or data. The NLM and the U.S.
- * Government disclaim all warranties, express or implied, including
- * warranties of performance, merchantability or fitness for any particular
- * purpose.
- *
- * Please cite the author in any work or product based on this material.
- *
- * ===========================================================================
- *
- * Authors: Vlad Lebedev
- *
- * File Description:
- * CLayoutProtProd -- utility class to layout protein products
- */
- #include <ncbi_pch.hpp>
- #include <gui/objutils/prot_product.hpp>
- #include <objmgr/scope.hpp>
- #include <objects/seq/Bioseq.hpp>
- BEGIN_NCBI_SCOPE
- USING_SCOPE(objects);
- CLayoutProtProd::CLayoutProtProd(CScope& scope, const CMappedFeat& feat)
- : CLayoutFeat(feat)
- {
- if (feat.IsSetProduct()) {
- m_Handle = scope.GetBioseqHandle(feat.GetProduct());
- }
- }
- const CObject* CLayoutProtProd::GetObject(TSeqPos pos) const
- {
- TSeqRange r = GetLocation().GetTotalRange();
- if (pos >= r.GetFrom() && pos <= r.GetTo()) {
- if (m_Handle) {
- CConstRef<CBioseq> bioseq = m_Handle.GetCompleteBioseq();
- return m_Handle.GetCompleteBioseq().GetPointer();
- }
- throw runtime_error("invalid bioseq handle");
- }
- return NULL;
- }
- bool CLayoutProtProd::HasObject(const CObject* obj) const
- {
- if (m_Handle) {
- const CBioseq* bioseq = m_Handle.GetCompleteBioseq();
- return bioseq == obj;
- }
- throw runtime_error("invalid bioseq handle");
- }
- END_NCBI_SCOPE
- /*
- * ===========================================================================
- * $Log: prot_product.cpp,v $
- * Revision 1000.0 2004/06/01 21:21:06 gouriano
- * PRODUCTION: IMPORTED [GCC34_MSVC7] Dev-tree R1.2
- *
- * Revision 1.2 2004/05/21 22:27:44 gorelenk
- * Added PCH ncbi_pch.hpp
- *
- * Revision 1.1 2004/04/30 11:48:16 dicuccio
- * Initial commit - split out from src/gui/utils
- *
- * Revision 1.7 2004/04/16 14:48:31 dicuccio
- * Cleaned up handling of GetBioseqCore()
- *
- * Revision 1.6 2004/04/15 13:00:11 lebedev
- * Changed GetObject to return NULL or const pointer based on given position
- *
- * Revision 1.5 2003/08/22 15:48:39 dicuccio
- * Added 'USING_SCOPE(objects)'
- *
- * Revision 1.4 2003/08/18 14:47:20 dicuccio
- * Changed nales: CFeature -> CLayoutFeat; CAlignment -> CLayoutAlign; CGraph ->
- * CLayoutGraph; CProtProduct -> CLayoutProtProd.
- *
- * Revision 1.3 2003/07/24 13:13:25 dicuccio
- * Changed CLayoutProtProd to return the protein bioseq as its object, not the CDS
- * from which it came
- *
- * Revision 1.2 2003/07/21 19:35:21 dicuccio
- * Changed storage mechanism - CLayoutObject::GetObject() is now pure virtual.
- * Changed CFeature to wrap a CMappedFeat instead of a CSeq_feat / CSeq_loc pair
- *
- * Revision 1.1 2003/07/18 13:36:41 lebedev
- * Initial revision
- *
- * ===========================================================================
- */
