seq_map.cpp
上传用户:yhdzpy8989
上传日期:2007-06-13
资源大小:13604k
文件大小:3k
- /*
- * ===========================================================================
- * PRODUCTION $Log: seq_map.cpp,v $
- * PRODUCTION Revision 1000.0 2004/06/01 21:21:17 gouriano
- * PRODUCTION PRODUCTION: IMPORTED [GCC34_MSVC7] Dev-tree R1.2
- * PRODUCTION
- * ===========================================================================
- */
- /* $Id: seq_map.cpp,v 1000.0 2004/06/01 21:21:17 gouriano Exp $
- * ===========================================================================
- *
- * PUBLIC DOMAIN NOTICE
- * National Center for Biotechnology Information
- *
- * This software/database is a "United States Government Work" under the
- * terms of the United States Copyright Act. It was written as part of
- * the author's official duties as a United States Government employee and
- * thus cannot be copyrighted. This software/database is freely available
- * to the public for use. The National Library of Medicine and the U.S.
- * Government have not placed any restriction on its use or reproduction.
- *
- * Although all reasonable efforts have been taken to ensure the accuracy
- * and reliability of the software and data, the NLM and the U.S.
- * Government do not and cannot warrant the performance or results that
- * may be obtained by using this software or data. The NLM and the U.S.
- * Government disclaim all warranties, express or implied, including
- * warranties of performance, merchantability or fitness for any particular
- * purpose.
- *
- * Please cite the author in any work or product based on this material.
- *
- * ===========================================================================
- *
- * Authors: Vlad Lebedev
- *
- * File Description:
- * CLayoutSeqMap -- utility class to layout sequence segments
- * and hold CSeq_id_Handle objects
- */
- #include <ncbi_pch.hpp>
- #include <gui/objutils/seq_map.hpp>
- #include <objmgr/seq_id_handle.hpp>
- BEGIN_NCBI_SCOPE
- USING_SCOPE(objects);
- CLayoutSeqMap::CLayoutSeqMap(CSeq_id_Handle hndl, const TSeqRange& range,
- const TSeqRange& ref_range)
- {
- m_SeqHandle = hndl;
-
- m_Location.Reset(new CSeq_loc());
- m_Location->SetInt().SetFrom(range.GetFrom());
- m_Location->SetInt().SetTo (range.GetTo() );
- m_RefLocation.Reset(new CSeq_loc());
- m_RefLocation->SetInt().SetFrom(ref_range.GetFrom());
- m_RefLocation->SetInt().SetTo (ref_range.GetTo() );
- }
- END_NCBI_SCOPE
- /*
- * ===========================================================================
- * $Log: seq_map.cpp,v $
- * Revision 1000.0 2004/06/01 21:21:17 gouriano
- * PRODUCTION: IMPORTED [GCC34_MSVC7] Dev-tree R1.2
- *
- * Revision 1.2 2004/05/21 22:27:44 gorelenk
- * Added PCH ncbi_pch.hpp
- *
- * Revision 1.1 2004/04/30 11:48:16 dicuccio
- * Initial commit - split out from src/gui/utils
- *
- * Revision 1.4 2004/03/23 12:24:11 lebedev
- * Changed seq_map to hold CSeq_id_Handle
- *
- * Revision 1.3 2004/03/11 17:49:40 dicuccio
- * Use TSeqRange instead of TRange
- *
- * Revision 1.2 2003/11/04 13:10:29 lebedev
- * Reference location added
- *
- * Revision 1.1 2003/10/30 13:19:20 lebedev
- * Initial revision
- *
- * ===========================================================================
- */