English
- /*
- * ===========================================================================
- * PRODUCTION $Log: alignment.cpp,v $
- * PRODUCTION Revision 1000.0 2004/06/01 21:19:48 gouriano
- * PRODUCTION PRODUCTION: IMPORTED [GCC34_MSVC7] Dev-tree R1.3
- * PRODUCTION
- * ===========================================================================
- */
- /* $Id: alignment.cpp,v 1000.0 2004/06/01 21:19:48 gouriano Exp $
- * ===========================================================================
- *
- * PUBLIC DOMAIN NOTICE
- * National Center for Biotechnology Information
- *
- * This software/database is a "United States Government Work" under the
- * terms of the United States Copyright Act. It was written as part of
- * the author's official duties as a United States Government employee and
- * thus cannot be copyrighted. This software/database is freely available
- * to the public for use. The National Library of Medicine and the U.S.
- * Government have not placed any restriction on its use or reproduction.
- *
- * Although all reasonable efforts have been taken to ensure the accuracy
- * and reliability of the software and data, the NLM and the U.S.
- * Government do not and cannot warrant the performance or results that
- * may be obtained by using this software or data. The NLM and the U.S.
- * Government disclaim all warranties, express or implied, including
- * warranties of performance, merchantability or fitness for any particular
- * purpose.
- *
- * Please cite the author in any work or product based on this material.
- *
- * ===========================================================================
- *
- * Authors: Vlad Lebedev
- *
- * File Description:
- * CLayoutAlign -- utility class to layout alignments and hold CAlnVec objects
- */
- #include <ncbi_pch.hpp>
- #include <gui/objutils/alignment.hpp>
- BEGIN_NCBI_SCOPE
- USING_SCOPE(objects);
- CLayoutAlign::CLayoutAlign(const CAlnVec& aln_mgr,
- const CSeq_align& align)
- : m_AlnMgr(&aln_mgr),
- m_SeqAlign(&align)
- {
- TSignedSeqPos start = m_AlnMgr->GetSeqStart(m_AlnMgr->GetAnchor());
- TSignedSeqPos stop = m_AlnMgr->GetSeqStop (m_AlnMgr->GetAnchor());
- m_Location.Reset(new CSeq_loc());
- m_Location->SetInt().SetFrom(start);
- m_Location->SetInt().SetTo (stop);
- const CSeq_id& id = m_AlnMgr->GetSeqId(m_AlnMgr->GetAnchor());
- m_Location->SetId(id);
- }
- END_NCBI_SCOPE
- /*
- * ===========================================================================
- * $Log: alignment.cpp,v $
- * Revision 1000.0 2004/06/01 21:19:48 gouriano
- * PRODUCTION: IMPORTED [GCC34_MSVC7] Dev-tree R1.3
- *
- * Revision 1.3 2004/05/21 22:27:43 gorelenk
- * Added PCH ncbi_pch.hpp
- *
- * Revision 1.2 2004/05/14 14:25:20 dicuccio
- * Formatting changes
- *
- * Revision 1.1 2004/04/30 11:48:15 dicuccio
- * Initial commit - split out from src/gui/utils
- *
- * Revision 1.7 2004/04/12 16:50:21 dicuccio
- * Derive alignment range from alignment manager. Set ID field on location
- *
- * Revision 1.6 2004/03/11 17:49:40 dicuccio
- * Use TSeqRange instead of TRange
- *
- * Revision 1.5 2003/09/19 00:28:59 ucko
- * CLayoutAlign: use an unsigned range per CAlnMap::GetSeqRange's new rettype.
- *
- * Revision 1.4 2003/08/22 15:48:12 dicuccio
- * Added 'USING_SCOPE(objects)'
- *
- * Revision 1.3 2003/08/18 14:47:08 dicuccio
- * Changed nales: CFeature -> CLayoutFeat; CAlignment -> CLayoutAlign; CGraph ->
- * CLayoutGraph; CProtProduct -> CLayoutProtProd.
- *
- * Revision 1.2 2003/07/21 19:35:21 dicuccio
- * Changed storage mechanism - CLayoutObject::GetObject() is now pure virtual.
- * Changed CFeature to wrap a CMappedFeat instead of a CSeq_feat / CSeq_loc pair
- *
- * Revision 1.1 2003/07/18 13:36:41 lebedev
- * Initial revision
- *
- * ===========================================================================
- */
