test_helper.hpp
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- /*
- * ===========================================================================
- * PRODUCTION $Log: test_helper.hpp,v $
- * PRODUCTION Revision 1000.0 2004/04/12 17:43:11 gouriano
- * PRODUCTION PRODUCTION: IMPORTED [CATCHUP_003] Dev-tree R1.1
- * PRODUCTION
- * ===========================================================================
- */
- /* $Id: test_helper.hpp,v 1000.0 2004/04/12 17:43:11 gouriano Exp $
- * ===========================================================================
- *
- * PUBLIC DOMAIN NOTICE
- * National Center for Biotechnology Information
- *
- * This software/database is a "United States Government Work" under the
- * terms of the United States Copyright Act. It was written as part of
- * the author's official duties as a United States Government employee and
- * thus cannot be copyrighted. This software/database is freely available
- * to the public for use. The National Library of Medicine and the U.S.
- * Government have not placed any restriction on its use or reproduction.
- *
- * Although all reasonable efforts have been taken to ensure the accuracy
- * and reliability of the software and data, the NLM and the U.S.
- * Government do not and cannot warrant the performance or results that
- * may be obtained by using this software or data. The NLM and the U.S.
- * Government disclaim all warranties, express or implied, including
- * warranties of performance, merchantability or fitness for any particular
- * purpose.
- *
- * Please cite the author in any work or product based on this material.
- *
- * ===========================================================================
- *
- * Authors: Eugene Vasilchenko, Aleksey Grichenko, Denis Vakatov
- *
- * File Description:
- * Bio sequence data generator to test Object Manager
- *
- * ---------------------------------------------------------------------------
- * $Log: test_helper.hpp,v $
- * Revision 1000.0 2004/04/12 17:43:11 gouriano
- * PRODUCTION: IMPORTED [CATCHUP_003] Dev-tree R1.1
- *
- * Revision 1.1 2003/12/16 17:51:17 kuznets
- * Code reorganization
- *
- * Revision 1.10 2003/06/02 16:06:39 dicuccio
- * Rearranged src/objects/ subtree. This includes the following shifts:
- * - src/objects/asn2asn --> arc/app/asn2asn
- * - src/objects/testmedline --> src/objects/ncbimime/test
- * - src/objects/objmgr --> src/objmgr
- * - src/objects/util --> src/objmgr/util
- * - src/objects/alnmgr --> src/objtools/alnmgr
- * - src/objects/flat --> src/objtools/flat
- * - src/objects/validator --> src/objtools/validator
- * - src/objects/cddalignview --> src/objtools/cddalignview
- * In addition, libseq now includes six of the objects/seq... libs, and libmmdb
- * replaces the three libmmdb? libs.
- *
- * Revision 1.9 2003/03/04 16:43:53 grichenk
- * +Test CFeat_CI with eResolve_All flag
- *
- * Revision 1.8 2003/02/28 16:37:47 vasilche
- * Fixed expected feature count.
- * Added optional flags to testobjmgr to dump generated data and found features.
- *
- * Revision 1.7 2002/12/26 16:39:24 vasilche
- * Object manager class CSeqMap rewritten.
- *
- * Revision 1.6 2002/05/09 14:21:50 grichenk
- * Turned GetTitle() test on, removed unresolved seq-map test
- *
- * Revision 1.5 2002/05/06 03:28:53 vakatov
- * OM/OM1 renaming
- *
- * Revision 1.4 2002/05/03 21:28:12 ucko
- * Introduce T(Signed)SeqPos.
- *
- * Revision 1.3 2002/04/22 20:07:45 grichenk
- * Commented calls to CBioseq::ConstructExcludedSequence()
- *
- * Revision 1.2 2002/03/18 21:47:15 grichenk
- * Moved most includes to test_helper.cpp
- * Added test for CBioseq::ConstructExcludedSequence()
- *
- * Revision 1.1 2002/03/13 18:06:31 gouriano
- * restructured MT test. Put common functions into a separate file
- *
- *
- * ===========================================================================
- */
- #include <objmgr/object_manager.hpp>
- #include <objmgr/scope.hpp>
- #include <objects/seqloc/Seq_id.hpp>
- #include <objects/general/Object_id.hpp>
- #include <objects/seqset/Seq_entry.hpp>
- #include <corelib/ncbistd.hpp>
- #include <corelib/ncbiobj.hpp>
- BEGIN_NCBI_SCOPE
- BEGIN_SCOPE(objects)
- class CSeq_entry;
- class CSeq_annot;
- class CScope;
- class CSeq_id;
- class CDataGenerator
- {
- public:
- static CSeq_entry& CreateTestEntry1(int index);
- static CSeq_entry& CreateTestEntry2(int index);
- static CSeq_entry& CreateTestEntry1a(int index);
- static CSeq_entry& CreateConstructedEntry(int idx, int index);
- // static CSeq_entry& CreateConstructedExclusionEntry(int idx, int index);
- static CSeq_annot& CreateAnnotation1(int index);
- static bool sm_DumpEntries;
- };
- class CTestHelper
- {
- public:
- static void ProcessBioseq(CScope& scope, CSeq_id& id,
- TSeqPos seq_len,
- string seq_str, string seq_str_compl,
- int seq_desc_cnt,
- int seq_feat_ra_cnt,
- int seq_feat_cnt, int seq_featrg_cnt,
- int seq_align_cnt, int seq_alignrg_cnt,
- size_t feat_annots_cnt, size_t featrg_annots_cnt,
- size_t align_annots_cnt, size_t alignrg_annots_cnt,
- bool tse_feat_test = false,
- bool have_errors = false);
- static void TestDataRetrieval( CScope& scope, int idx, int delta);
- static bool sm_DumpFeatures;
- };
- END_SCOPE(objects)
- END_NCBI_SCOPE