Seq_annot.cpp
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- /*
- * ===========================================================================
- * PRODUCTION $Log: Seq_annot.cpp,v $
- * PRODUCTION Revision 1000.1 2004/06/01 19:33:13 gouriano
- * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.6
- * PRODUCTION
- * ===========================================================================
- */
- /* $Id: Seq_annot.cpp,v 1000.1 2004/06/01 19:33:13 gouriano Exp $
- * ===========================================================================
- *
- * PUBLIC DOMAIN NOTICE
- * National Center for Biotechnology Information
- *
- * This software/database is a "United States Government Work" under the
- * terms of the United States Copyright Act. It was written as part of
- * the author's official duties as a United States Government employee and
- * thus cannot be copyrighted. This software/database is freely available
- * to the public for use. The National Library of Medicine and the U.S.
- * Government have not placed any restriction on its use or reproduction.
- *
- * Although all reasonable efforts have been taken to ensure the accuracy
- * and reliability of the software and data, the NLM and the U.S.
- * Government do not and cannot warrant the performance or results that
- * may be obtained by using this software or data. The NLM and the U.S.
- * Government disclaim all warranties, express or implied, including
- * warranties of performance, merchantability or fitness for any particular
- * purpose.
- *
- * Please cite the author in any work or product based on this material.
- *
- * ===========================================================================
- *
- * Author: .......
- *
- * File Description:
- * .......
- *
- * Remark:
- * This code was originally generated by application DATATOOL
- * using specifications from the data definition file
- * 'seq.asn'.
- */
- // standard includes
- // generated includes
- #include <ncbi_pch.hpp>
- #include <objects/seq/Seq_annot.hpp>
- #include <objects/general/Date.hpp>
- // generated classes
- BEGIN_NCBI_SCOPE
- BEGIN_objects_SCOPE // namespace ncbi::objects::
- // destructor
- CSeq_annot::~CSeq_annot(void)
- {
- }
- void CSeq_annot::AddName(const string &name)
- {
- //NB: this used list::remove_if(), which is not portable to Windows
- TDesc::Tdata::iterator iter = SetDesc().Set().begin();
- for ( ; iter != SetDesc().Set().end(); ) {
- if ((*iter)->IsName() ) {
- iter = SetDesc().Set().erase(iter);
- } else {
- ++iter;
- }
- }
- CRef<CAnnotdesc> desc(new CAnnotdesc());
- desc->SetName(name);
- SetDesc().Set().push_back(desc);
- }
- void CSeq_annot::AddTitle(const string& title)
- {
- LOG_POST(Warning
- << "CSeq_annot::AddTitle(): AddTitle() is deprecated, "
- "use SetTitle() instead");
- SetTitle(title);
- }
- void CSeq_annot::SetTitle(const string &title)
- {
- TDesc::Tdata::iterator iter = SetDesc().Set().begin();
- for ( ; iter != SetDesc().Set().end(); ) {
- if ((*iter)->IsTitle() ) {
- iter = SetDesc().Set().erase(iter);
- } else {
- ++iter;
- }
- }
- CRef<CAnnotdesc> desc(new CAnnotdesc());
- desc->SetTitle(title);
- SetDesc().Set().push_back(desc);
- }
- void CSeq_annot::AddComment(const string &comment)
- {
- CRef<CAnnotdesc> desc(new CAnnotdesc());
- desc->SetComment(comment);
- SetDesc().Set().push_back(desc);
- }
- void CSeq_annot::SetCreateDate(const CTime& dt)
- {
- CRef<CDate> date(new CDate(dt));
- SetCreateDate(*date);
- }
- void CSeq_annot::SetCreateDate(CDate& date)
- {
- TDesc::Tdata::iterator iter = SetDesc().Set().begin();
- for ( ; iter != SetDesc().Set().end(); ) {
- if ((*iter)->IsCreate_date() ) {
- iter = SetDesc().Set().erase(iter);
- } else {
- ++iter;
- }
- }
- CRef<CAnnotdesc> desc(new CAnnotdesc());
- desc->SetCreate_date(date);
- SetDesc().Set().push_back(desc);
- }
- void CSeq_annot::SetUpdateDate(const CTime& dt)
- {
- CRef<CDate> date(new CDate(dt));
- SetUpdateDate(*date);
- }
- void CSeq_annot::SetUpdateDate(CDate& date)
- {
- TDesc::Tdata::iterator iter = SetDesc().Set().begin();
- for ( ; iter != SetDesc().Set().end(); ) {
- if ((*iter)->IsUpdate_date() ) {
- iter = SetDesc().Set().erase(iter);
- } else {
- ++iter;
- }
- }
- CRef<CAnnotdesc> desc(new CAnnotdesc());
- desc->SetUpdate_date(date);
- SetDesc().Set().push_back(desc);
- }
- void CSeq_annot::AddUserObject(CUser_object& obj)
- {
- CRef<CAnnotdesc> desc(new CAnnotdesc());
- desc->SetUser(obj);
- SetDesc().Set().push_back(desc);
- }
- END_objects_SCOPE // namespace ncbi::objects::
- END_NCBI_SCOPE
- /*
- * ===========================================================================
- *
- * $Log: Seq_annot.cpp,v $
- * Revision 1000.1 2004/06/01 19:33:13 gouriano
- * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.6
- *
- * Revision 1.6 2004/05/19 17:25:14 gorelenk
- * Added include of PCH - ncbi_pch.hpp
- *
- * Revision 1.5 2004/04/22 13:09:31 dicuccio
- * Added helper functions to add specific kinds of descriptions: dates, user
- * objects. Added SetTitle() - should replace AddTitle() (LOG_POST warning in
- * place about deprecation)
- *
- * Revision 1.4 2003/05/07 17:44:12 dicuccio
- * oops - make sure not to dereference end() of list in AddName()
- *
- * Revision 1.3 2003/05/07 17:30:01 dicuccio
- * Fix potential coredump in CSeq_annot::AddName()
- *
- * Revision 1.2 2003/05/07 13:08:09 dicuccio
- * Alternate implementation of SetTitle() - work-around for MSVC's broken
- * implementation of list::remove_if()
- *
- * Revision 1.1 2003/05/07 10:57:29 clausen
- * Added AddName, AddTitle, AddComment
- *
- *
- * ===========================================================================
- */
- /* Original file checksum: lines: 64, chars: 1875, CRC32: 377b3912 */