tinyseq.asn
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上传日期:2007-06-13
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- --
- -- ===========================================================================
- -- PRODUCTION $Log: tinyseq.asn,v $
- -- PRODUCTION Revision 1000.0 2003/10/29 21:40:15 gouriano
- -- PRODUCTION PRODUCTION: IMPORTED [ORIGINAL] Dev-tree R6.1
- -- PRODUCTION
- -- ===========================================================================
- --
- --$Revision: 1000.0 $
- --**********************************************************************
- --
- -- ASN.1 for a tiny Bioseq in XML
- -- basically a structured FASTA file with a few extras
- -- in this case we drop all modularity of components
- -- All ids are Optional - simpler structure, less checking
- -- Components of organism are hard coded - can't easily add or change
- -- sequence is just string whether DNA or protein
- -- by James Ostell, 2000
- --
- --**********************************************************************
- NCBI-TSeq DEFINITIONS ::=
- BEGIN
- TSeq ::= SEQUENCE {
- seqtype ENUMERATED {
- nucleotide (1),
- protein (2) },
- gi INTEGER OPTIONAL,
- accver VisibleString OPTIONAL,
- sid VisibleString OPTIONAL,
- local VisibleString OPTIONAL,
- taxid INTEGER OPTIONAL,
- orgname VisibleString OPTIONAL,
- defline VisibleString,
- length INTEGER,
- sequence VisibleString }
- TSeqSet ::= SEQUENCE OF TSeq -- a bunch of them
- END