seqblock.asn
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- --
- -- ===========================================================================
- -- PRODUCTION $Log: seqblock.asn,v $
- -- PRODUCTION Revision 1000.0 2003/10/29 21:31:28 gouriano
- -- PRODUCTION PRODUCTION: IMPORTED [ORIGINAL] Dev-tree R6.0
- -- PRODUCTION
- -- ===========================================================================
- --
- --$Revision: 1000.0 $
- --*********************************************************************
- --
- -- 1990 - J.Ostell
- -- Version 3.0 - June 1994
- --
- --*********************************************************************
- --*********************************************************************
- --
- -- EMBL specific data
- -- This block of specifications was developed by Reiner Fuchs of EMBL
- -- Updated by J.Ostell, 1994
- --
- --*********************************************************************
- EMBL-General DEFINITIONS ::=
- BEGIN
- EXPORTS EMBL-dbname, EMBL-xref, EMBL-block;
- IMPORTS Date, Object-id FROM NCBI-General;
- EMBL-dbname ::= CHOICE {
- code ENUMERATED {
- embl(0),
- genbank(1),
- ddbj(2),
- geninfo(3),
- medline(4),
- swissprot(5),
- pir(6),
- pdb(7),
- epd(8),
- ecd(9),
- tfd(10),
- flybase(11),
- prosite(12),
- enzyme(13),
- mim(14),
- ecoseq(15),
- hiv(16) ,
- other (255) } ,
- name VisibleString }
- EMBL-xref ::= SEQUENCE {
- dbname EMBL-dbname,
- id SEQUENCE OF Object-id }
- EMBL-block ::= SEQUENCE {
- class ENUMERATED {
- not-set(0),
- standard(1),
- unannotated(2),
- other(255) } DEFAULT standard,
- div ENUMERATED {
- fun(0),
- inv(1),
- mam(2),
- org(3),
- phg(4),
- pln(5),
- pri(6),
- pro(7),
- rod(8),
- syn(9),
- una(10),
- vrl(11),
- vrt(12),
- pat(13),
- est(14),
- sts(15),
- other (255) } OPTIONAL,
- creation-date Date,
- update-date Date,
- extra-acc SEQUENCE OF VisibleString OPTIONAL,
- keywords SEQUENCE OF VisibleString OPTIONAL,
- xref SEQUENCE OF EMBL-xref OPTIONAL }
- END
- --*********************************************************************
- --
- -- SWISSPROT specific data
- -- This block of specifications was developed by Mark Cavanaugh of
- -- NCBI working with Amos Bairoch of SWISSPROT
- --
- --*********************************************************************
- SP-General DEFINITIONS ::=
- BEGIN
- EXPORTS SP-block;
- IMPORTS Date, Dbtag FROM NCBI-General
- Seq-id FROM NCBI-Seqloc;
- SP-block ::= SEQUENCE { -- SWISSPROT specific descriptions
- class ENUMERATED {
- not-set (0) ,
- standard (1) , -- conforms to all SWISSPROT checks
- prelim (2) , -- only seq and biblio checked
- other (255) } ,
- extra-acc SET OF VisibleString OPTIONAL , -- old SWISSPROT ids
- imeth BOOLEAN DEFAULT FALSE , -- seq known to start with Met
- plasnm SET OF VisibleString OPTIONAL, -- plasmid names carrying gene
- seqref SET OF Seq-id OPTIONAL, -- xref to other sequences
- dbref SET OF Dbtag OPTIONAL , -- xref to non-sequence dbases
- keywords SET OF VisibleString OPTIONAL , -- keywords
- created Date OPTIONAL , -- creation date
- sequpd Date OPTIONAL , -- sequence update
- annotupd Date OPTIONAL } -- annotation update
- END
- --*********************************************************************
- --
- -- PIR specific data
- -- This block of specifications was developed by Jim Ostell of
- -- NCBI
- --
- --*********************************************************************
- PIR-General DEFINITIONS ::=
- BEGIN
- EXPORTS PIR-block;
- IMPORTS Seq-id FROM NCBI-Seqloc;
- PIR-block ::= SEQUENCE { -- PIR specific descriptions
- had-punct BOOLEAN OPTIONAL , -- had punctuation in sequence ?
- host VisibleString OPTIONAL ,
- source VisibleString OPTIONAL , -- source line
- summary VisibleString OPTIONAL ,
- genetic VisibleString OPTIONAL ,
- includes VisibleString OPTIONAL ,
- placement VisibleString OPTIONAL ,
- superfamily VisibleString OPTIONAL ,
- keywords SEQUENCE OF VisibleString OPTIONAL ,
- cross-reference VisibleString OPTIONAL ,
- date VisibleString OPTIONAL ,
- seq-raw VisibleString OPTIONAL , -- seq with punctuation
- seqref SET OF Seq-id OPTIONAL } -- xref to other sequences
- END
- --*********************************************************************
- --
- -- GenBank specific data
- -- This block of specifications was developed by Jim Ostell of
- -- NCBI
- --
- --*********************************************************************
- GenBank-General DEFINITIONS ::=
- BEGIN
- EXPORTS GB-block;
- IMPORTS Date FROM NCBI-General;
- GB-block ::= SEQUENCE { -- GenBank specific descriptions
- extra-accessions SEQUENCE OF VisibleString OPTIONAL ,
- source VisibleString OPTIONAL , -- source line
- keywords SEQUENCE OF VisibleString OPTIONAL ,
- origin VisibleString OPTIONAL,
- date VisibleString OPTIONAL , -- OBSOLETE old form Entry Date
- entry-date Date OPTIONAL , -- replaces date
- div VisibleString OPTIONAL , -- GenBank division
- taxonomy VisibleString OPTIONAL } -- continuation line of organism
- END
- --**********************************************************************
- -- PRF specific definition
- -- PRF is a protein sequence database crated and maintained by
- -- Protein Research Foundation, Minoo-city, Osaka, Japan.
- --
- -- Written by A.Ogiwara, Inst.Chem.Res. (Dr.Kanehisa's Lab),
- -- Kyoto Univ., Japan
- --
- --**********************************************************************
- PRF-General DEFINITIONS ::=
- BEGIN
- EXPORTS PRF-block;
- PRF-block ::= SEQUENCE {
- extra-src PRF-ExtraSrc OPTIONAL,
- keywords SEQUENCE OF VisibleString OPTIONAL
- }
- PRF-ExtraSrc ::= SEQUENCE {
- host VisibleString OPTIONAL,
- part VisibleString OPTIONAL,
- state VisibleString OPTIONAL,
- strain VisibleString OPTIONAL,
- taxon VisibleString OPTIONAL
- }
- END
- --*********************************************************************
- --
- -- PDB specific data
- -- This block of specifications was developed by Jim Ostell and
- -- Steve Bryant of NCBI
- --
- --*********************************************************************
- PDB-General DEFINITIONS ::=
- BEGIN
- EXPORTS PDB-block;
- IMPORTS Date FROM NCBI-General;
- PDB-block ::= SEQUENCE { -- PDB specific descriptions
- deposition Date , -- deposition date month,year
- class VisibleString ,
- compound SEQUENCE OF VisibleString ,
- source SEQUENCE OF VisibleString ,
- exp-method VisibleString OPTIONAL , -- present if NOT X-ray diffraction
- replace PDB-replace OPTIONAL } -- replacement history
- PDB-replace ::= SEQUENCE {
- date Date ,
- ids SEQUENCE OF VisibleString } -- entry ids replace by this one
- END