biblio.asn
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- --
- -- ===========================================================================
- -- PRODUCTION $Log: biblio.asn,v $
- -- PRODUCTION Revision 1000.0 2003/10/29 21:07:18 gouriano
- -- PRODUCTION PRODUCTION: IMPORTED [ORIGINAL] Dev-tree R6.2
- -- PRODUCTION
- -- ===========================================================================
- --
- --$Revision: 1000.0 $
- --****************************************************************
- --
- -- NCBI Bibliographic data elements
- -- by James Ostell, 1990
- --
- -- Taken from the American National Standard for
- -- Bibliographic References
- -- ANSI Z39.29-1977
- -- Version 3.0 - June 1994
- -- PubMedId added in 1996
- -- ArticleIds and eprint elements added in 1999
- --
- --****************************************************************
- NCBI-Biblio DEFINITIONS ::=
- BEGIN
- EXPORTS Cit-art, Cit-jour, Cit-book, Cit-pat, Cit-let, Id-pat, Cit-gen,
- Cit-proc, Cit-sub, Title, Author, PubMedId;
- IMPORTS Person-id, Date, Dbtag FROM NCBI-General;
- -- Article Ids
- ArticleId ::= CHOICE { -- can be many ids for an article
- pubmed PubMedId , -- see types below
- medline MedlineUID ,
- doi DOI ,
- pii PII ,
- pmcid PmcID ,
- pmcpid PmcPid ,
- pmpid PmPid ,
- other Dbtag } -- generic catch all
-
- PubMedId ::= INTEGER -- Id from the PubMed database at NCBI
- MedlineUID ::= INTEGER -- Id from MEDLINE
- DOI ::= VisibleString -- Document Object Identifier
- PII ::= VisibleString -- Controlled Publisher Identifier
- PmcID ::= INTEGER -- PubMed Central Id
- PmcPid ::= VisibleString -- Publisher Id supplied to PubMed Central
- PmPid ::= VisibleString -- Publisher Id supplied to PubMed
- ArticleIdSet ::= SET OF ArticleId
- -- Status Dates
- PubStatus ::= INTEGER { -- points of publication
- received (1) , -- date manuscript received for review
- accepted (2) , -- accepted for publication
- epublish (3) , -- published electronically by publisher
- ppublish (4) , -- published in print by publisher
- revised (5) , -- article revised by publisher/author
- pmc (6) , -- article first appeared in PubMed Central
- pmcr (7) , -- article revision in PubMed Central
- pubmed (8) , -- article citation first appeared in PubMed
- pubmedr (9) , -- article citation revision in PubMed
- aheadofprint (10), -- epublish, but will be followed by print
- premedline (11), -- date into PreMedline status
- medline (12), -- date made a MEDLINE record
- other (255) }
- PubStatusDate ::= SEQUENCE { -- done as a structure so fields can be added
- pubstatus PubStatus ,
- date Date } -- time may be added later
- PubStatusDateSet ::= SET OF PubStatusDate
-
- -- Citation Types
- Cit-art ::= SEQUENCE { -- article in journal or book
- title Title OPTIONAL , -- title of paper (ANSI requires)
- authors Auth-list OPTIONAL , -- authors (ANSI requires)
- from CHOICE { -- journal or book
- journal Cit-jour ,
- book Cit-book ,
- proc Cit-proc } ,
- ids ArticleIdSet OPTIONAL } -- lots of ids
- Cit-jour ::= SEQUENCE { -- Journal citation
- title Title , -- title of journal
- imp Imprint }
- Cit-book ::= SEQUENCE { -- Book citation
- title Title , -- Title of book
- coll Title OPTIONAL , -- part of a collection
- authors Auth-list, -- authors
- imp Imprint }
- Cit-proc ::= SEQUENCE { -- Meeting proceedings
- book Cit-book , -- citation to meeting
- meet Meeting } -- time and location of meeting
- -- Patent number and date-issue were made optional in 1997 to
- -- support patent applications being issued from the USPTO
- -- Semantically a Cit-pat must have either a patent number or
- -- an application number (or both) to be valid
- Cit-pat ::= SEQUENCE { -- patent citation
- title VisibleString ,
- authors Auth-list, -- author/inventor
- country VisibleString , -- Patent Document Country
- doc-type VisibleString , -- Patent Document Type
- number VisibleString OPTIONAL, -- Patent Document Number
- date-issue Date OPTIONAL, -- Patent Issue/Pub Date
- class SEQUENCE OF VisibleString OPTIONAL , -- Patent Doc Class Code
- app-number VisibleString OPTIONAL , -- Patent Doc Appl Number
- app-date Date OPTIONAL , -- Patent Appl File Date
- applicants Auth-list OPTIONAL , -- Applicants
- assignees Auth-list OPTIONAL , -- Assignees
- priority SEQUENCE OF Patent-priority OPTIONAL , -- Priorities
- abstract VisibleString OPTIONAL } -- abstract of patent
- Patent-priority ::= SEQUENCE {
- country VisibleString , -- Patent country code
- number VisibleString , -- number assigned in that country
- date Date } -- date of application
- Id-pat ::= SEQUENCE { -- just to identify a patent
- country VisibleString , -- Patent Document Country
- id CHOICE {
- number VisibleString , -- Patent Document Number
- app-number VisibleString } , -- Patent Doc Appl Number
- doc-type VisibleString OPTIONAL } -- Patent Doc Type
- Cit-let ::= SEQUENCE { -- letter, thesis, or manuscript
- cit Cit-book , -- same fields as a book
- man-id VisibleString OPTIONAL , -- Manuscript identifier
- type ENUMERATED {
- manuscript (1) ,
- letter (2) ,
- thesis (3) } OPTIONAL }
- -- NOTE: this is just to cite a
- -- direct data submission, see NCBI-Submit
- -- for the form of a sequence submission
- Cit-sub ::= SEQUENCE { -- citation for a direct submission
- authors Auth-list , -- not necessarily authors of the paper
- imp Imprint OPTIONAL , -- this only used to get date.. will go
- medium ENUMERATED { -- medium of submission
- paper (1) ,
- tape (2) ,
- floppy (3) ,
- email (4) ,
- other (255) } OPTIONAL ,
- date Date OPTIONAL , -- replaces imp, will become required
- descr VisibleString OPTIONAL } -- description of changes for public view
-
- Cit-gen ::= SEQUENCE { -- NOT from ANSI, this is a catchall
- cit VisibleString OPTIONAL , -- anything, not parsable
- authors Auth-list OPTIONAL ,
- muid INTEGER OPTIONAL , -- medline uid
- journal Title OPTIONAL ,
- volume VisibleString OPTIONAL ,
- issue VisibleString OPTIONAL ,
- pages VisibleString OPTIONAL ,
- date Date OPTIONAL ,
- serial-number INTEGER OPTIONAL , -- for GenBank style references
- title VisibleString OPTIONAL , -- eg. cit="unpublished",title="title"
- pmid PubMedId OPTIONAL } -- PubMed Id
-
-
- -- Authorship Group
- Auth-list ::= SEQUENCE {
- names CHOICE {
- std SEQUENCE OF Author , -- full citations
- ml SEQUENCE OF VisibleString , -- MEDLINE, semi-structured
- str SEQUENCE OF VisibleString } , -- free for all
- affil Affil OPTIONAL } -- author affiliation
- Author ::= SEQUENCE {
- name Person-id , -- Author, Primary or Secondary
- level ENUMERATED {
- primary (1),
- secondary (2) } OPTIONAL ,
- role ENUMERATED { -- Author Role Indicator
- compiler (1),
- editor (2),
- patent-assignee (3),
- translator (4) } OPTIONAL ,
- affil Affil OPTIONAL ,
- is-corr BOOLEAN OPTIONAL } -- TRUE if corresponding author
- Affil ::= CHOICE {
- str VisibleString , -- unparsed string
- std SEQUENCE { -- std representation
- affil VisibleString OPTIONAL , -- Author Affiliation, Name
- div VisibleString OPTIONAL , -- Author Affiliation, Division
- city VisibleString OPTIONAL , -- Author Affiliation, City
- sub VisibleString OPTIONAL , -- Author Affiliation, County Sub
- country VisibleString OPTIONAL , -- Author Affiliation, Country
- street VisibleString OPTIONAL , -- street address, not ANSI
- email VisibleString OPTIONAL ,
- fax VisibleString OPTIONAL ,
- phone VisibleString OPTIONAL ,
- postal-code VisibleString OPTIONAL }}
- -- Title Group
- -- Valid for = A = Analytic (Cit-art)
- -- J = Journals (Cit-jour)
- -- B = Book (Cit-book)
- -- Valid for:
- Title ::= SET OF CHOICE {
- name VisibleString , -- Title, Anal,Coll,Mono AJB
- tsub VisibleString , -- Title, Subordinate A B
- trans VisibleString , -- Title, Translated AJB
- jta VisibleString , -- Title, Abbreviated J
- iso-jta VisibleString , -- specifically ISO jta J
- ml-jta VisibleString , -- specifically MEDLINE jta J
- coden VisibleString , -- a coden J
- issn VisibleString , -- ISSN J
- abr VisibleString , -- Title, Abbreviated B
- isbn VisibleString } -- ISBN B
- Imprint ::= SEQUENCE { -- Imprint group
- date Date , -- date of publication
- volume VisibleString OPTIONAL ,
- issue VisibleString OPTIONAL ,
- pages VisibleString OPTIONAL ,
- section VisibleString OPTIONAL ,
- pub Affil OPTIONAL, -- publisher, required for book
- cprt Date OPTIONAL, -- copyright date, " " "
- part-sup VisibleString OPTIONAL , -- part/sup of volume
- language VisibleString DEFAULT "ENG" , -- put here for simplicity
- prepub ENUMERATED { -- for prepublication citations
- submitted (1) , -- submitted, not accepted
- in-press (2) , -- accepted, not published
- other (255) } OPTIONAL ,
- part-supi VisibleString OPTIONAL , -- part/sup on issue
- retract CitRetract OPTIONAL , -- retraction info
- pubstatus PubStatus OPTIONAL , -- current status of this publication
- history PubStatusDateSet OPTIONAL } -- dates for this record
- CitRetract ::= SEQUENCE {
- type ENUMERATED { -- retraction of an entry
- retracted (1) , -- this citation retracted
- notice (2) , -- this citation is a retraction notice
- in-error (3) , -- an erratum was published about this
- erratum (4) } , -- this is a published erratum
- exp VisibleString OPTIONAL } -- citation and/or explanation
- Meeting ::= SEQUENCE {
- number VisibleString ,
- date Date ,
- place Affil OPTIONAL }
-
- END