seqsplit.asn
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上传日期：2007-06-13
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文件大小：4k
- --$Revision: 1000.1 $
- --********************************************************************
- --
- -- Network Id server network access
- -- Vasilchenko 2003
- --
- --
- --*********************************************************************
- --
- -- ID2.asn
- --
- -- messages for id server network access
- --
- --*********************************************************************
- NCBI-Seq-split DEFINITIONS ::=
- BEGIN
- EXPORTS ID2S-Chunk-Id, ID2S-Seq-annot-Info;
- IMPORTS Seq-loc FROM NCBI-Seqloc
- Seq-annot, Seq-descr, Seq-literal FROM NCBI-Sequence
- Seq-align FROM NCBI-Seqalign;
- ----------------------------------------------------------------------------
- -- Blob split info types
- ----------------------------------------------------------------------------
- ID2S-Split-Info ::= SEQUENCE {
- bioseqs-info SET OF ID2S-Bioseqs-Info OPTIONAL,
- chunks SET OF ID2S-Chunk-Info
- }
- ID2S-Bioseqs-Info ::= SEQUENCE {
- info ID2S-Bioseq-Info,
- bioseqs ID2-Id-Range
- }
- ID2S-Bioseq-Info ::= SEQUENCE {
- gap-count INTEGER OPTIONAL,
- seq-map-has-ref BOOLEAN OPTIONAL,
- sequence-split ID2S-Sequence-Split-Info OPTIONAL
- }
- ID2S-Sequence-Split-Info ::= SEQUENCE {
- block-size INTEGER,
- chunk-start ID2S-Chunk-Id,
- chunk-blocks SEQUENCE OF INTEGER
- }
- ID2S-Chunk-Info ::= SEQUENCE {
- id ID2S-Chunk-Id,
- content SET OF ID2S-Chunk-Content
- }
- ID2S-Chunk-Content ::= CHOICE {
- seq-descr ID2S-Seq-descr-Info,
- seq-annot ID2S-Seq-annot-Info,
- seq-assembly ID2S-Seq-assembly-Info,
- seq-map ID2S-Seq-map-Info,
- seq-data ID2S-Seq-data-Info,
- seq-annot-place ID2S-Seq-annot-place-Info
- }
- ID2S-Seq-descr-Info ::= SEQUENCE {
- type-mask INTEGER, -- mask of Seq-descr types,
- bioseqs SET OF ID2-Id-Range OPTIONAL,
- bioseq-sets SET OF ID2-Id-Range OPTIONAL
- }
- ID2S-Seq-annot-Info ::= SEQUENCE {
- -- name is set if this is named annot
- -- name may be empty which differ from unnamed annot
- name VisibleString OPTIONAL,
- align NULL OPTIONAL,
- graph NULL OPTIONAL,
- feat SET OF ID2S-Feat-type-Info OPTIONAL,
- seq-loc ID2-Seq-loc OPTIONAL
- }
- ID2S-Seq-annot-place-Info ::= SEQUENCE {
- name VisibleString OPTIONAL,
- bioseqs SET OF ID2-Id-Range OPTIONAL,
- bioseq-sets SET OF ID2-Id-Range OPTIONAL
- }
- ID2S-Feat-type-Info ::= SEQUENCE {
- type INTEGER,
- subtypes SET OF INTEGER OPTIONAL
- }
- ID2S-Seq-assembly-Info ::= SEQUENCE {
- bioseqs SET OF ID2-Id-Range
- }
- ID2S-Seq-map-Info ::= ID2-Seq-loc
- ID2S-Seq-data-Info ::= ID2-Seq-loc
- ID2S-Chunk ::= SEQUENCE {
- data SET OF ID2S-Chunk-Data
- }
- ID2S-Chunk-Data ::= SEQUENCE {
- id CHOICE {
- bioseq-set INTEGER,
- gi INTEGER
- },
- descrs SET OF Seq-descr OPTIONAL,
- annots SET OF Seq-annot OPTIONAL,
- assembly SET OF Seq-align OPTIONAL,
- seq-map SEQUENCE OF Seq-literal OPTIONAL,
- seq-data SEQUENCE OF Seq-literal OPTIONAL
- }
- ----------------------------------------------------------------------------
- -- utility types
- ----------------------------------------------------------------------------
- ID2S-Chunk-Id ::= INTEGER
- ID2-Id-Range ::= SEQUENCE {
- start INTEGER, -- gi for Bioseq, local id for Bioseq-set
- count INTEGER DEFAULT 1
- }
- ID2-Seq-loc ::= CHOICE {
- gi-whole INTEGER,
- interval ID2-Interval,
- packed-ints ID2-Packed-Seq-ints,
- gi-whole-range ID2-Id-Range,
- loc-set SET OF ID2-Seq-loc,
- seq-loc Seq-loc
- }
- ID2-Interval ::= SEQUENCE {
- gi INTEGER,
- start INTEGER,
- length INTEGER DEFAULT 1
- }
- ID2-Seq-range ::= SEQUENCE {
- start INTEGER,
- length INTEGER DEFAULT 1
- }
- ID2-Packed-Seq-ints ::= SEQUENCE {
- gi INTEGER,
- intervals SET OF ID2-Seq-range
- }
- END
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