English
- /*
- * ===========================================================================
- * PRODUCTION $Log: tblastn_options.cpp,v $
- * PRODUCTION Revision 1000.2 2004/06/01 18:06:25 gouriano
- * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.5
- * PRODUCTION
- * ===========================================================================
- */
- /* $Id: tblastn_options.cpp,v 1000.2 2004/06/01 18:06:25 gouriano Exp $
- * ===========================================================================
- *
- * PUBLIC DOMAIN NOTICE
- * National Center for Biotechnology Information
- *
- * This software/database is a "United States Government Work" under the
- * terms of the United States Copyright Act. It was written as part of
- * the author's official duties as a United States Government employee and
- * thus cannot be copyrighted. This software/database is freely available
- * to the public for use. The National Library of Medicine and the U.S.
- * Government have not placed any restriction on its use or reproduction.
- *
- * Although all reasonable efforts have been taken to ensure the accuracy
- * and reliability of the software and data, the NLM and the U.S.
- * Government do not and cannot warrant the performance or results that
- * may be obtained by using this software or data. The NLM and the U.S.
- * Government disclaim all warranties, express or implied, including
- * warranties of performance, merchantability or fitness for any particular
- * purpose.
- *
- * Please cite the author in any work or product based on this material.
- *
- * ===========================================================================
- *
- * Authors: Christiam Camacho
- *
- */
- /// @file tblastn_options.cpp
- /// Implements the CTBlastnOptionsHandle class.
- #include <ncbi_pch.hpp>
- #include <algo/blast/api/tblastn_options.hpp>
- #include "blast_setup.hpp"
- /** @addtogroup AlgoBlast
- *
- * @{
- */
- BEGIN_NCBI_SCOPE
- BEGIN_SCOPE(blast)
- CTBlastnOptionsHandle::CTBlastnOptionsHandle(EAPILocality locality)
- : CBlastProteinOptionsHandle(locality)
- {
- if (m_Opts->GetLocality() == CBlastOptions::eRemote) {
- return;
- }
- SetDefaults();
- m_Opts->SetProgram(eTblastn);
- }
- void
- CTBlastnOptionsHandle::SetLookupTableDefaults()
- {
- CBlastProteinOptionsHandle::SetLookupTableDefaults();
- SetWordThreshold(BLAST_WORD_THRESHOLD_TBLASTN);
- }
- void
- CTBlastnOptionsHandle::SetScoringOptionsDefaults()
- {
- CBlastProteinOptionsHandle::SetScoringOptionsDefaults();
- }
- void
- CTBlastnOptionsHandle::SetHitSavingOptionsDefaults()
- {
- CBlastProteinOptionsHandle::SetHitSavingOptionsDefaults();
- m_Opts->SetSumStatisticsMode();
- }
- void
- CTBlastnOptionsHandle::SetSubjectSequenceOptionsDefaults()
- {
- SetDbGeneticCode(BLAST_GENETIC_CODE);
- }
- END_SCOPE(blast)
- END_NCBI_SCOPE
- /* @} */
- /*
- * ===========================================================================
- * $Log: tblastn_options.cpp,v $
- * Revision 1000.2 2004/06/01 18:06:25 gouriano
- * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.5
- *
- * Revision 1.5 2004/05/21 21:41:02 gorelenk
- * Added PCH ncbi_pch.hpp
- *
- * Revision 1.4 2004/03/19 15:13:34 camacho
- * Move to doxygen group AlgoBlast
- *
- * Revision 1.3 2004/01/16 21:54:51 bealer
- * - Blast4 API changes.
- *
- * Revision 1.2 2003/12/03 16:42:33 dondosha
- * SetDbGeneticCode takes care of setting both integer and string now
- *
- * Revision 1.1 2003/11/26 18:24:01 camacho
- * +Blast Option Handle classes
- *
- * ===========================================================================
- */
