trace_graph.hpp
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上传日期：2007-06-13
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- /*
- * ===========================================================================
- * PRODUCTION $Log: trace_graph.hpp,v $
- * PRODUCTION Revision 1000.1 2004/06/01 19:51:52 gouriano
- * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.8
- * PRODUCTION
- * ===========================================================================
- */
- #ifndef __GUI_WIDGETS_ALNMULTI___ALIGN_TRACE_GRAPH__HPP
- #define __GUI_WIDGETS_ALNMULTI___ALIGN_TRACE_GRAPH__HPP
- /* $Id: trace_graph.hpp,v 1000.1 2004/06/01 19:51:52 gouriano Exp $
- * ===========================================================================
- *
- * PUBLIC DOMAIN NOTICE
- * National Center for Biotechnology Information
- *
- * This software/database is a "United States Government Work" under the
- * terms of the United States Copyright Act. It was written as part of
- * the author's official duties as a United States Government employee and
- * thus cannot be copyrighted. This software/database is freely available
- * to the public for use. The National Library of Medicine and the U.S.
- * Government have not placed any restriction on its use or reproduction.
- *
- * Although all reasonable efforts have been taken to ensure the accuracy
- * and reliability of the software and data, the NLM and the U.S.
- * Government do not and cannot warrant the performance or results that
- * may be obtained by using this software or data. The NLM and the U.S.
- * Government disclaim all warranties, express or implied, including
- * warranties of performance, merchantability or fitness for any particular
- * purpose.
- *
- * Please cite the author in any work or product based on this material.
- *
- * ===========================================================================
- *
- * Authors: Andrey Yazhuk
- *
- * File Description:
- *
- */
- #include <objtools/alnmgr/alnmap.hpp>
- #include <gui/opengl/glpane.hpp>
- #include <gui/widgets/aln_multiple/alnvec_row_graph.hpp>
- #include <gui/widgets/aln_multiple/trace_data.hpp>
- BEGIN_NCBI_SCOPE
- USING_SCOPE(objects);
- class NCBI_GUIWIDGETS_ALNMULTIPLE_EXPORT CTraceGraphProperties
- : public IAlnRowGraphProperties
- {
- public:
- /// chromatogram rendering mode
- enum ESingnalStyle {
- eCurve,
- eIntensity
- };
-
- enum EGraphState {
- eHidden,
- eCollapsed,
- eExpanded
- };
- public:
- ESingnalStyle m_SignalStyle;
- EGraphState m_ConfGraphState;
- EGraphState m_SignalGraphState;
- bool m_bReverseColors; // reverse colors for signals measured on back strand
- // so that they correspond to assembly sequence rather than to trace sequence
- CTraceGraphProperties();
- CTraceGraphProperties& operator=(const CTraceGraphProperties& orig);
- };
- ////////////////////////////////////////////////////////////////////////////////
- /// CTraceGraph - trace data renderer.
- /// Renders confidence graph and A, C, T, G chromatograms using CTraceData as
- /// datasource.
- class NCBI_GUIWIDGETS_ALNMULTIPLE_EXPORT CTraceGraph : public IAlnVecRowGraph
- {
- public:
- typedef CConstRef<CAlnMap::CAlnChunkVec> TChunkVec;
- typedef CTraceGraphProperties::ESingnalStyle ESingnalStyle;
- typedef CTraceGraphProperties::EGraphState EGraphState;
- CTraceGraph(const CBioseq_Handle& handle, bool b_neg_strand);
- /// @name IAlnVecRowGraph implementaion
- /// @{
- virtual ~CTraceGraph();
-
- virtual bool HasData() const;
- virtual bool IsCreated() const;
- virtual bool Create();
- virtual void Destroy();
- virtual const IAlnRowGraphProperties* GetProperties() const;
- virtual void SetProperties(IAlnRowGraphProperties* props);
- virtual int GetPreferredHeight() const;
- virtual void Render(CGlPane& pane, int y, int h, const TChunkVec& chunks);
- /// @}
- void SetConfGraphState(EGraphState state);
- void SetSignalGraphState(EGraphState state);
-
- protected:
- int x_GetConfGraphH() const;
- int x_GetSignalGraphH() const;
- void x_RenderContour(CGlPane& pane, int y,
- int conf_h, int total_h,
- const TChunkVec& chunks);
-
- void x_RenderConfGraph(CGlPane& pane, int y, int h,
- const TChunkVec& chunks);
-
- void x_RenderSignalGraph(CGlPane& pane, int y, int h,
- const TChunkVec& chunks);
-
- void x_RenderCurveChunk(CGlPane& pane,
- CConstRef<CAlnMap::CAlnChunk> chunk,
- const CTraceData::TPositions& positions,
- const CTraceData::TValues& values,
- int bottom_y, int h, int amp);
-
- void x_RenderIntensityGraphs(CGlPane& pane, int y, int h,
- const TChunkVec& chunks);
- const CGlColor& GetColorByValue(double value, int signal) const;
- int x_FindSampleToLeft(double pos) const;
- int x_FindSampleToRight(double pos) const;
- protected:
- CTraceDataProxy m_DataProxy;
- CTraceData* m_pData;
-
- CTraceGraphProperties m_Props;
- vector<CGlColor> m_vSignalColors;
- };
- END_NCBI_SCOPE
- /*
- * ===========================================================================
- * $Log: trace_graph.hpp,v $
- * Revision 1000.1 2004/06/01 19:51:52 gouriano
- * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.8
- *
- * Revision 1.8 2004/05/14 13:20:08 yazhuk
- * Added m_bReverseColors
- *
- * Revision 1.7 2004/03/29 18:59:28 yazhuk
- * Added support for data loading and Properties management
- *
- * Revision 1.6 2004/03/26 14:59:02 yazhuk
- * Renamed EMode to ESignalStyle
- *
- * Revision 1.5 2004/03/25 13:06:13 dicuccio
- * Minor rearrangement to avoid compiler warning
- *
- * Revision 1.4 2004/03/08 17:05:56 yazhuk
- * Inherited from IAlnVecRowGraph
- *
- * Revision 1.3 2004/03/08 15:37:59 yazhuk
- * Implemented state management expanded/collapsed/hidden
- *
- * Revision 1.2 2004/03/02 18:06:35 kans
- * remove CTraceGraph from x_RenderContour
- *
- * Revision 1.1 2004/03/02 15:11:00 yazhuk
- * Initial revision
- *
- * ===========================================================================
- */
- #endif // __GUI_WIDGETS_ALNMULTI___ALIGN_TRACE_GRAPH__HPP
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