cross_aln_ds.hpp
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- /*
- * ===========================================================================
- * PRODUCTION $Log: cross_aln_ds.hpp,v $
- * PRODUCTION Revision 1000.0 2004/04/12 18:22:54 gouriano
- * PRODUCTION PRODUCTION: IMPORTED [CATCHUP_003] Dev-tree R1.2
- * PRODUCTION
- * ===========================================================================
- */
- #ifndef GUI_WIDGETS_ALN_CROSSALN___CROSS_ALN_DS__HPP
- #define GUI_WIDGETS_ALN_CROSSALN___CROSS_ALN_DS__HPP
- /* $Id: cross_aln_ds.hpp,v 1000.0 2004/04/12 18:22:54 gouriano Exp $
- * ===========================================================================
- *
- * PUBLIC DOMAIN NOTICE
- * National Center for Biotechnology Information
- *
- * This software/database is a "United States Government Work" under the
- * terms of the United States Copyright Act. It was written as part of
- * the author's official duties as a United States Government employee and
- * thus cannot be copyrighted. This software/database is freely available
- * to the public for use. The National Library of Medicine and the U.S.
- * Government have not placed any restriction on its use or reproduction.
- *
- * Although all reasonable efforts have been taken to ensure the accuracy
- * and reliability of the software and data, the NLM and the U.S.
- * Government do not and cannot warrant the performance or results that
- * may be obtained by using this software or data. The NLM and the U.S.
- * Government disclaim all warranties, express or implied, including
- * warranties of performance, merchantability or fitness for any particular
- * purpose.
- *
- * Please cite the author in any work or product based on this material.
- *
- * ===========================================================================
- *
- * Authors: Vlad Lebedev
- *
- * File Description:
- * Data source for Cross Alignment Widget
- * (see <gui/widgets/aln_crossaln/cross_aln_widget.hpp>)
- *
- */
- #include <gui/gui.hpp>
- #include <gui/widgets/hit_matrix/hit_matrix_ds.hpp>
- BEGIN_NCBI_SCOPE
- class NCBI_GUIWIDGETS_ALNCROSSALN_EXPORT CCrossAlnDataSource
- : public CHitMatrixDataSource
- {
- public:
- CCrossAlnDataSource(const CSeq_align_set& aset, CScope& scope);
- CCrossAlnDataSource(const CSeq_annot& annot, CScope& scope);
- virtual ~CCrossAlnDataSource();
-
- /// selects query and subject from the set of available sequences
- bool SelectIds(const TIdRef& q_id, const TIdRef& s_id);
-
- TSignedSeqPos GetOffset() const;
- const TSeqRange& GetQueryRange() const;
- const TSeqRange& GetSubjectRange() const;
- const TSeqRange& GetTotalRange() const;
- protected:
- TSignedSeqPos m_Offset;
- TSeqRange m_TotalRange;
- TSeqRange m_QueryRange;
- TSeqRange m_SubjectRange;
- };
- END_NCBI_SCOPE
- /*
- * ===========================================================================
- * $Log: cross_aln_ds.hpp,v $
- * Revision 1000.0 2004/04/12 18:22:54 gouriano
- * PRODUCTION: IMPORTED [CATCHUP_003] Dev-tree R1.2
- *
- * Revision 1.2 2004/03/11 17:21:37 dicuccio
- * Use TSeqRange instead of TRange. Deprecated TIndex, TDimension, TPosition.
- * Corrected use of constructor - add default NULL const char* label
- *
- * Revision 1.1 2003/12/22 13:10:44 lebedev
- * Initial revision
- *
- * ===========================================================================
- */
- #endif /* GUI_WIDGETS_ALN_CROSSALN___CROSS_ALN_DS__HPP */