aln_table_ds.hpp
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- /*
- * ===========================================================================
- * PRODUCTION $Log: aln_table_ds.hpp,v $
- * PRODUCTION Revision 1000.0 2004/04/16 19:22:30 gouriano
- * PRODUCTION PRODUCTION: IMPORTED [CATCHUP_003] Dev-tree R1.1
- * PRODUCTION
- * ===========================================================================
- */
- #ifndef GUI_WIDGETS_ALN_TABLE___ALN_TABLE_DS__HPP
- #define GUI_WIDGETS_ALN_TABLE___ALN_TABLE_DS__HPP
- /* $Id: aln_table_ds.hpp,v 1000.0 2004/04/16 19:22:30 gouriano Exp $
- * ===========================================================================
- *
- * PUBLIC DOMAIN NOTICE
- * National Center for Biotechnology Information
- *
- * This software/database is a "United States Government Work" under the
- * terms of the United States Copyright Act. It was written as part of
- * the author's official duties as a United States Government employee and
- * thus cannot be copyrighted. This software/database is freely available
- * to the public for use. The National Library of Medicine and the U.S.
- * Government have not placed any restriction on its use or reproduction.
- *
- * Although all reasonable efforts have been taken to ensure the accuracy
- * and reliability of the software and data, the NLM and the U.S.
- * Government do not and cannot warrant the performance or results that
- * may be obtained by using this software or data. The NLM and the U.S.
- * Government disclaim all warranties, express or implied, including
- * warranties of performance, merchantability or fitness for any particular
- * purpose.
- *
- * Please cite the author in any work or product based on this material.
- *
- * ===========================================================================
- *
- * Authors: Mike DiCuccio
- *
- * File Description:
- *
- */
- #include <objmgr/scope.hpp>
- #include <objects/seqalign/Seq_align.hpp>
- BEGIN_NCBI_SCOPE
- struct SAlnProxy
- {
- CConstRef<objects::CSeq_align> align;
- mutable CRef<objects::CScope> scope;
- };
- class NCBI_GUIWIDGETS_ALNCROSSALN_EXPORT CAlnTableDS : public CObject
- {
- public:
- typedef SAlnProxy TAlnProxy;
- typedef list<TAlnProxy> TAlignments;
- CAlnTableDS(objects::CScope& scope,
- const objects::CSeq_loc& loc);
- CAlnTableDS(objects::CScope& scope,
- const objects::CSeq_annot& annot);
- CAlnTableDS(objects::CScope& scope,
- const objects::CSeq_align& align);
- CAlnTableDS(objects::CScope& scope,
- const objects::CSeq_align_set& aligns);
- CAlnTableDS(objects::CScope& scope,
- const list< CConstRef<objects::CSeq_align> >& aligns);
- void Add(objects::CScope& scope, const objects::CSeq_align& aln);
- const TAlignments& GetAlignments(void) const;
- private:
- TAlignments m_Alignments;
- };
- END_NCBI_SCOPE
- /*
- * ===========================================================================
- * $Log: aln_table_ds.hpp,v $
- * Revision 1000.0 2004/04/16 19:22:30 gouriano
- * PRODUCTION: IMPORTED [CATCHUP_003] Dev-tree R1.1
- *
- * Revision 1.1 2004/04/16 15:57:04 dicuccio
- * Initial revision
- *
- * ===========================================================================
- */
- #endif // GUI_WIDGETS_ALN_TABLE___ALN_TABLE_DS__HPP