prot_product.hpp
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- /*
- * ===========================================================================
- * PRODUCTION $Log: prot_product.hpp,v $
- * PRODUCTION Revision 1000.0 2004/06/01 19:55:47 gouriano
- * PRODUCTION PRODUCTION: IMPORTED [GCC34_MSVC7] Dev-tree R1.4
- * PRODUCTION
- * ===========================================================================
- */
- #ifndef GUI_OBJUTILS___PROT_PRODUCT__HPP
- #define GUI_OBJUTILS___PROT_PRODUCT__HPP
- /* $Id: prot_product.hpp,v 1000.0 2004/06/01 19:55:47 gouriano Exp $
- * ===========================================================================
- *
- * PUBLIC DOMAIN NOTICE
- * National Center for Biotechnology Information
- *
- * This software/database is a "United States Government Work" under the
- * terms of the United States Copyright Act. It was written as part of
- * the author's official duties as a United States Government employee and
- * thus cannot be copyrighted. This software/database is freely available
- * to the public for use. The National Library of Medicine and the U.S.
- * Government have not placed any restriction on its use or reproduction.
- *
- * Although all reasonable efforts have been taken to ensure the accuracy
- * and reliability of the software and data, the NLM and the U.S.
- * Government do not and cannot warrant the performance or results that
- * may be obtained by using this software or data. The NLM and the U.S.
- * Government disclaim all warranties, express or implied, including
- * warranties of performance, merchantability or fitness for any particular
- * purpose.
- *
- * Please cite the author in any work or product based on this material.
- *
- * ===========================================================================
- *
- * Authors: Vlad Lebedev
- *
- * File Description:
- * CLayoutProtProd -- utility class to layout protein products
- */
- #include <corelib/ncbiobj.hpp>
- //#include <gui/core/types.hpp>
- #include <gui/objutils/feature.hpp>
- #include <objmgr/bioseq_handle.hpp>
- /** @addtogroup GUI_OBJUTILS
- *
- * @{
- */
- BEGIN_NCBI_SCOPE
- class NCBI_GUIOBJUTILS_EXPORT CLayoutProtProd : public CLayoutFeat
- {
- public:
- // ctor
- CLayoutProtProd(objects::CScope& scope,
- const objects::CMappedFeat& feat);
- // Retrieve the feature as an object. For safety's sake,
- // this returns the remapped feature.
- const CObject* GetObject(TSeqPos pos) const;
- bool HasObject(const CObject* obj) const;
- // retrieve the type of this object
- EType GetType() const;
- private:
- // handle of the bioseq that holds the protein
- objects::CBioseq_Handle m_Handle;
- };
- inline
- CLayoutProtProd::EType CLayoutProtProd::GetType() const
- {
- return eFeatProtProduct;
- }
- END_NCBI_SCOPE
- /* @} */
- /*
- * ===========================================================================
- * $Log: prot_product.hpp,v $
- * Revision 1000.0 2004/06/01 19:55:47 gouriano
- * PRODUCTION: IMPORTED [GCC34_MSVC7] Dev-tree R1.4
- *
- * Revision 1.4 2004/05/14 14:24:47 dicuccio
- * Added new pure virtual requirement on CLayoutObject(): GetType(), returns enum
- * defined in CLayoutObject
- *
- * Revision 1.3 2004/05/03 13:34:54 dicuccio
- * FIxed include guards, doxygen groups
- *
- * Revision 1.2 2004/05/03 12:41:35 dicuccio
- * Fixed #includes and export specifiers
- *
- * Revision 1.1 2004/04/30 11:52:53 dicuccio
- * Split out from gui/utils
- *
- * Revision 1.8 2004/04/16 14:27:17 dicuccio
- * Added doxygen module tag
- *
- * Revision 1.7 2004/04/15 12:57:43 lebedev
- * Changed GetObject to return NULL or const pointer based on given position
- *
- * Revision 1.6 2003/09/29 15:20:08 dicuccio
- * Deprecated gui/scope.hpp. Merged gui/core/types.hpp into gui/types.hpp
- *
- * Revision 1.5 2003/08/22 15:57:11 dicuccio
- * Removed 'USING_SCOPE(objects)'. Removed export specifier from inline structs
- *
- * Revision 1.4 2003/08/18 14:53:26 dicuccio
- * Changed nales: CFeature -> CLayoutFeat; CAlignment -> CLayoutAlign; CGraph ->
- * CLayoutGraph; CProtProduct -> CLayoutProtProd.
- * Removed USING_SCOPE(objects);
- *
- * Revision 1.3 2003/07/24 13:11:24 dicuccio
- * Changed CLayoutProtProd to return the protein bioseq as its object, not the CDS
- * from which it originated
- *
- * Revision 1.2 2003/07/21 19:24:09 dicuccio
- * Changed storage mechanism: CLayoutObject::GetObject() is pure virtual. Also,
- * CFeature now stores a CMappedFeat object instead of a CSeq_feat / CSeq_loc pair
- *
- * Revision 1.1 2003/07/18 13:33:52 lebedev
- * Initial revision
- *
- * ===========================================================================
- */
- #endif // GUI_OBJUTILS___PROT_PRODUCT__HPP