agp_read.hpp
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- /*
- * ===========================================================================
- * PRODUCTION $Log: agp_read.hpp,v $
- * PRODUCTION Revision 1000.0 2004/04/12 17:38:27 gouriano
- * PRODUCTION PRODUCTION: IMPORTED [CATCHUP_003] Dev-tree R1.1
- * PRODUCTION
- * ===========================================================================
- */
- /* $Id: agp_read.hpp,v 1000.0 2004/04/12 17:38:27 gouriano Exp $
- * ===========================================================================
- *
- * PUBLIC DOMAIN NOTICE
- * National Center for Biotechnology Information
- *
- * This software/database is a "United States Government Work" under the
- * terms of the United States Copyright Act. It was written as part of
- * the author's official duties as a United States Government employee and
- * thus cannot be copyrighted. This software/database is freely available
- * to the public for use. The National Library of Medicine and the U.S.
- * Government have not placed any restriction on its use or reproduction.
- *
- * Although all reasonable efforts have been taken to ensure the accuracy
- * and reliability of the software and data, the NLM and the U.S.
- * Government do not and cannot warrant the performance or results that
- * may be obtained by using this software or data. The NLM and the U.S.
- * Government disclaim all warranties, express or implied, including
- * warranties of performance, merchantability or fitness for any particular
- * purpose.
- *
- * Please cite the author in any work or product based on this material.
- *
- * ===========================================================================
- *
- * Authors: Josh Cherry
- *
- * File Description: Read agp file
- */
- #ifndef OBJTOOLS_READERS___AGP_READ__HPP
- #define OBJTOOLS_READERS___AGP_READ__HPP
- #include <corelib/ncbistd.hpp>
- #include <objects/seq/Bioseq.hpp>
- #include <objects/seqset/Seq_entry.hpp>
- #include <objects/seqset/Bioseq_set.hpp>
- BEGIN_NCBI_SCOPE
- /// Read an agp file from a stream, constructing delta sequences
- void NCBI_XOBJREAD_EXPORT AgpRead(CNcbiIstream& is,
- vector<CRef<objects::CBioseq> >& bioseqs);
- /// Same thing, but wrap bioseqs in Seq-entry's.
- void NCBI_XOBJREAD_EXPORT AgpRead(CNcbiIstream& is,
- vector<CRef<objects::CSeq_entry> >& entries);
- /// Return a Bioseq-set containing everything.
- CRef<objects::CBioseq_set> NCBI_XOBJREAD_EXPORT AgpRead(CNcbiIstream& is);
- END_NCBI_SCOPE
- #endif // OBJTOOLS_READERS___AGP_READ__HPP
- /*
- * =========================================================================
- * $Log: agp_read.hpp,v $
- * Revision 1000.0 2004/04/12 17:38:27 gouriano
- * PRODUCTION: IMPORTED [CATCHUP_003] Dev-tree R1.1
- *
- * Revision 1.1 2003/12/08 15:49:33 jcherry
- * Initial version
- *
- * =========================================================================
- */