English
- /*
- * ===========================================================================
- * PRODUCTION $Log: contig_item.hpp,v $
- * PRODUCTION Revision 1000.1 2004/06/01 19:39:15 gouriano
- * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.3
- * PRODUCTION
- * ===========================================================================
- */
- #ifndef OBJTOOLS_FORMAT_ITEMS___CONTIG_ITEM__HPP
- #define OBJTOOLS_FORMAT_ITEMS___CONTIG_ITEM__HPP
- /* $Id: contig_item.hpp,v 1000.1 2004/06/01 19:39:15 gouriano Exp $
- * ===========================================================================
- *
- * PUBLIC DOMAIN NOTICE
- * National Center for Biotechnology Information
- *
- * This software/database is a "United States Government Work" under the
- * terms of the United States Copyright Act. It was written as part of
- * the author's official duties as a United States Government employee and
- * thus cannot be copyrighted. This software/database is freely available
- * to the public for use. The National Library of Medicine and the U.S.
- * Government have not placed any restriction on its use or reproduction.
- *
- * Although all reasonable efforts have been taken to ensure the accuracy
- * and reliability of the software and data, the NLM and the U.S.
- * Government do not and cannot warrant the performance or results that
- * may be obtained by using this software or data. The NLM and the U.S.
- * Government disclaim all warranties, express or implied, including
- * warranties of performance, merchantability or fitness for any particular
- * purpose.
- *
- * Please cite the author in any work or product based on this material.
- *
- * ===========================================================================
- *
- * Author: Aaron Ucko, NCBI
- * Mati Shomrat
- *
- * File Description:
- * Contig item for flat-file generator
- *
- */
- #include <corelib/ncbistd.hpp>
- #include <objects/seqloc/Seq_loc.hpp>
- #include <objtools/format/items/item_base.hpp>
- BEGIN_NCBI_SCOPE
- BEGIN_SCOPE(objects)
- class CBioseqContext;
- class IFormatter;
- ///////////////////////////////////////////////////////////////////////////
- //
- // CONTIG
- class CContigItem : public CFlatItem
- {
- public:
- CContigItem(CBioseqContext& ctx);
- void Format(IFormatter& formatter, IFlatTextOStream& text_os) const;
- const CSeq_loc& GetLoc(void) const { return *m_Loc; }
- private:
- void x_GatherInfo(CBioseqContext& ctx);
- // data
- CRef<CSeq_loc> m_Loc;
- };
- END_SCOPE(objects)
- END_NCBI_SCOPE
- /*
- * ===========================================================================
- *
- * $Log: contig_item.hpp,v $
- * Revision 1000.1 2004/06/01 19:39:15 gouriano
- * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.3
- *
- * Revision 1.3 2004/04/22 15:34:41 shomrat
- * Changes in context
- *
- * Revision 1.2 2004/02/19 17:49:35 shomrat
- * use non-const reference
- *
- * Revision 1.1 2003/12/17 19:45:27 shomrat
- * Initial revision (adapted from flat lib)
- *
- *
- * ===========================================================================
- */
- #endif /* OBJTOOLS_FORMAT_ITEMS___CONTIG_ITEM__HPP */
