flat_qual_slots.hpp
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- /*
- * ===========================================================================
- * PRODUCTION $Log: flat_qual_slots.hpp,v $
- * PRODUCTION Revision 1000.1 2004/06/01 19:39:35 gouriano
- * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.3
- * PRODUCTION
- * ===========================================================================
- */
- #ifndef OBJTOOLS_FLAT___FLAT_QUAL_SLOTS__HPP
- #define OBJTOOLS_FLAT___FLAT_QUAL_SLOTS__HPP
- /* $Id: flat_qual_slots.hpp,v 1000.1 2004/06/01 19:39:35 gouriano Exp $
- * ===========================================================================
- *
- * PUBLIC DOMAIN NOTICE
- * National Center for Biotechnology Information
- *
- * This software/database is a "United States Government Work" under the
- * terms of the United States Copyright Act. It was written as part of
- * the author's official duties as a United States Government employee and
- * thus cannot be copyrighted. This software/database is freely available
- * to the public for use. The National Library of Medicine and the U.S.
- * Government have not placed any restriction on its use or reproduction.
- *
- * Although all reasonable efforts have been taken to ensure the accuracy
- * and reliability of the software and data, the NLM and the U.S.
- * Government do not and cannot warrant the performance or results that
- * may be obtained by using this software or data. The NLM and the U.S.
- * Government disclaim all warranties, express or implied, including
- * warranties of performance, merchantability or fitness for any particular
- * purpose.
- *
- * Please cite the author in any work or product based on this material.
- *
- * ===========================================================================
- *
- * Author: Aaron Ucko, NCBI
- *
- * File Description:
- * new (early 2003) flat-file formatter -- qualifier slots
- * (public only because one can't predeclare enums...)
- *
- */
- #include <corelib/ncbistd.hpp>
- BEGIN_NCBI_SCOPE
- BEGIN_SCOPE(objects)
- // super set of feature qualifiers defined by the consortium and genbank
- // specific qualifiers.
- enum EFeatureQualifier {
- eFQ_none,
- eFQ_allele,
- eFQ_anticodon,
- eFQ_bond,
- eFQ_bond_type,
- eFQ_bound_moiety,
- eFQ_cds_product,
- eFQ_citation,
- eFQ_clone,
- eFQ_coded_by,
- eFQ_codon,
- eFQ_codon_start,
- eFQ_cons_splice,
- eFQ_db_xref,
- eFQ_derived_from,
- eFQ_direction,
- eFQ_EC_number,
- eFQ_encodes,
- eFQ_evidence,
- eFQ_exception,
- eFQ_exception_note,
- eFQ_figure,
- eFQ_frequency,
- eFQ_function,
- eFQ_gene,
- eFQ_gene_desc,
- eFQ_gene_allele,
- eFQ_gene_map,
- eFQ_gene_syn,
- eFQ_gene_syn_refseq,
- eFQ_gene_note,
- eFQ_gene_xref,
- eFQ_go_component,
- eFQ_go_function,
- eFQ_go_process,
- eFQ_heterogen,
- eFQ_illegal_qual,
- eFQ_insertion_seq,
- eFQ_label,
- eFQ_locus_tag,
- eFQ_map,
- eFQ_maploc,
- eFQ_mod_base,
- eFQ_modelev,
- eFQ_number,
- eFQ_operon,
- eFQ_organism,
- eFQ_partial,
- eFQ_PCR_conditions,
- eFQ_peptide,
- eFQ_phenotype,
- eFQ_product,
- eFQ_product_quals,
- eFQ_prot_activity,
- eFQ_prot_comment,
- eFQ_prot_EC_number,
- eFQ_prot_note,
- eFQ_prot_method,
- eFQ_prot_conflict,
- eFQ_prot_desc,
- eFQ_prot_missing,
- eFQ_prot_name,
- eFQ_prot_names,
- eFQ_protein_id,
- eFQ_pseudo,
- eFQ_region,
- eFQ_region_name,
- eFQ_replace,
- eFQ_rpt_family,
- eFQ_rpt_type,
- eFQ_rpt_unit,
- eFQ_rrna_its,
- eFQ_sec_str_type,
- eFQ_selenocysteine,
- eFQ_selenocysteine_note,
- eFQ_seqfeat_note,
- eFQ_site,
- eFQ_site_type,
- eFQ_standard_name,
- eFQ_transcription,
- eFQ_transcript_id,
- eFQ_transcript_id_note,
- eFQ_transl_except,
- eFQ_transl_table,
- eFQ_translation,
- eFQ_transposon,
- eFQ_trna_aa,
- eFQ_trna_codons,
- eFQ_usedin,
- eFQ_xtra_prod_quals
- };
- enum ESourceQualifier {
- eSQ_none,
- eSQ_acronym,
- eSQ_anamorph,
- eSQ_authority,
- eSQ_biotype,
- eSQ_biovar,
- eSQ_breed,
- eSQ_cell_line,
- eSQ_cell_type,
- eSQ_chemovar,
- eSQ_chromosome,
- eSQ_citation,
- eSQ_clone,
- eSQ_clone_lib,
- eSQ_common,
- eSQ_common_name,
- eSQ_country,
- eSQ_cultivar,
- eSQ_db_xref,
- eSQ_org_xref,
- eSQ_dev_stage,
- eSQ_dosage,
- eSQ_ecotype,
- eSQ_endogenous_virus_name,
- eSQ_environmental_sample,
- eSQ_extrachrom,
- eSQ_focus,
- eSQ_forma,
- eSQ_forma_specialis,
- eSQ_frequency,
- eSQ_gb_acronym,
- eSQ_gb_anamorph,
- eSQ_gb_synonym,
- eSQ_genotype,
- eSQ_germline,
- eSQ_group,
- eSQ_haplotype,
- eSQ_insertion_seq_name,
- eSQ_isolate,
- eSQ_isolation_source,
- eSQ_lab_host,
- eSQ_label,
- eSQ_macronuclear,
- eSQ_map,
- eSQ_mol_type,
- eSQ_old_lineage,
- eSQ_old_name,
- eSQ_organism,
- eSQ_organelle,
- eSQ_orgmod_note,
- eSQ_pathovar,
- eSQ_plasmid_name,
- eSQ_plastid_name,
- eSQ_pop_variant,
- eSQ_rearranged,
- eSQ_segment,
- eSQ_seqfeat_note,
- eSQ_sequenced_mol,
- eSQ_serogroup,
- eSQ_serotype,
- eSQ_serovar,
- eSQ_sex,
- eSQ_spec_or_nat_host,
- eSQ_specimen_voucher,
- eSQ_strain,
- eSQ_subclone,
- eSQ_subgroup,
- eSQ_sub_species,
- eSQ_substrain,
- eSQ_subtype,
- eSQ_subsource_note,
- eSQ_synonym,
- eSQ_teleomorph,
- eSQ_tissue_lib,
- eSQ_tissue_type,
- eSQ_transgenic,
- eSQ_transposon_name,
- eSQ_type,
- eSQ_unstructured,
- eSQ_usedin,
- eSQ_variety,
- eSQ_zero_orgmod,
- eSQ_one_orgmod,
- eSQ_zero_subsrc
- };
- END_SCOPE(objects)
- END_NCBI_SCOPE
- /*
- * ===========================================================================
- *
- * $Log: flat_qual_slots.hpp,v $
- * Revision 1000.1 2004/06/01 19:39:35 gouriano
- * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.3
- *
- * Revision 1.3 2004/05/19 14:43:27 shomrat
- * added comment
- *
- * Revision 1.2 2004/03/05 18:49:55 shomrat
- * added feature qualifiers
- *
- * Revision 1.1 2003/12/17 19:47:06 shomrat
- * Initial revision (adapted from flat lib)
- *
- *
- * ===========================================================================
- */
- #endif /* OBJTOOLS_FLAT___FLAT_QUAL_SLOTS__HPP */
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