seq_align_handle.hpp
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- /*
- * ===========================================================================
- * PRODUCTION $Log: seq_align_handle.hpp,v $
- * PRODUCTION Revision 1000.0 2004/06/01 19:25:37 gouriano
- * PRODUCTION PRODUCTION: IMPORTED [GCC34_MSVC7] Dev-tree R1.1
- * PRODUCTION
- * ===========================================================================
- */
- #ifndef SEQ_ALIGN_HANDLE__HPP
- #define SEQ_ALIGN_HANDLE__HPP
- /* $Id: seq_align_handle.hpp,v 1000.0 2004/06/01 19:25:37 gouriano Exp $
- * ===========================================================================
- *
- * PUBLIC DOMAIN NOTICE
- * National Center for Biotechnology Information
- *
- * This software/database is a "United States Government Work" under the
- * terms of the United States Copyright Act. It was written as part of
- * the author's official duties as a United States Government employee and
- * thus cannot be copyrighted. This software/database is freely available
- * to the public for use. The National Library of Medicine and the U.S.
- * Government have not placed any restriction on its use or reproduction.
- *
- * Although all reasonable efforts have been taken to ensure the accuracy
- * and reliability of the software and data, the NLM and the U.S.
- * Government do not and cannot warrant the performance or results that
- * may be obtained by using this software or data. The NLM and the U.S.
- * Government disclaim all warranties, express or implied, including
- * warranties of performance, merchantability or fitness for any particular
- * purpose.
- *
- * Please cite the author in any work or product based on this material.
- *
- * ===========================================================================
- *
- * Author: Aleksey Grichenko, Eugene Vasilchenko
- *
- * File Description:
- * Seq-align handle
- *
- */
- #include <corelib/ncbiobj.hpp>
- #include <objmgr/impl/heap_scope.hpp>
- #include <objects/seqalign/Seq_align.hpp>
- #include <objmgr/impl/seq_annot_info.hpp>
- BEGIN_NCBI_SCOPE
- BEGIN_SCOPE(objects)
- class CScope;
- class CSeq_annot_Handle;
- class CSeq_align_Handle
- {
- public:
- CSeq_align_Handle(void);
- CSeq_align_Handle(CScope& scope,
- const CSeq_annot_Info& annot_info,
- size_t index);
- ~CSeq_align_Handle(void);
- CSeq_annot_Handle GetAnnot(void) const;
- CConstRef<CSeq_align> GetSeq_align(void) const;
- // Mappings for CSeq_align methods
- CSeq_align::EType GetType(void) const;
- bool IsSetDim(void) const;
- CSeq_align::TDim GetDim(void) const;
- bool IsSetScore(void) const;
- const CSeq_align::TScore& GetScore(void) const;
- const CSeq_align::TSegs& GetSegs(void) const;
- bool IsSetBounds(void) const;
- const CSeq_align::TBounds& GetBounds(void) const;
- private:
- const CSeq_align& x_GetSeq_align(void) const;
- CHeapScope m_Scope;
- CConstRef<CSeq_annot_Info> m_Annot;
- size_t m_Index;
- };
- inline
- CSeq_align::EType CSeq_align_Handle::GetType(void) const
- {
- return x_GetSeq_align().GetType();
- }
- inline
- bool CSeq_align_Handle::IsSetDim(void) const
- {
- return x_GetSeq_align().IsSetDim();
- }
- inline
- CSeq_align::TDim CSeq_align_Handle::GetDim(void) const
- {
- return x_GetSeq_align().GetDim();
- }
- inline
- bool CSeq_align_Handle::IsSetScore(void) const
- {
- return x_GetSeq_align().IsSetScore();
- }
- inline
- const CSeq_align::TScore& CSeq_align_Handle::GetScore(void) const
- {
- return x_GetSeq_align().GetScore();
- }
- inline
- const CSeq_align::TSegs& CSeq_align_Handle::GetSegs(void) const
- {
- return x_GetSeq_align().GetSegs();
- }
- inline
- bool CSeq_align_Handle::IsSetBounds(void) const
- {
- return x_GetSeq_align().IsSetBounds();
- }
- inline
- const CSeq_align::TBounds& CSeq_align_Handle::GetBounds(void) const
- {
- return x_GetSeq_align().GetBounds();
- }
- END_SCOPE(objects)
- END_NCBI_SCOPE
- /*
- * ---------------------------------------------------------------------------
- * $Log: seq_align_handle.hpp,v $
- * Revision 1000.0 2004/06/01 19:25:37 gouriano
- * PRODUCTION: IMPORTED [GCC34_MSVC7] Dev-tree R1.1
- *
- * Revision 1.1 2004/05/04 18:06:06 grichenk
- * Initial revision
- *
- *
- * ===========================================================================
- */
- #endif // SEQ_ALIGN_HANDLE__HPP