make_cdr_prods.hpp
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- /*
- * ===========================================================================
- * PRODUCTION $Log: make_cdr_prods.hpp,v $
- * PRODUCTION Revision 1000.0 2003/11/18 15:47:20 gouriano
- * PRODUCTION PRODUCTION: IMPORTED [ORIGINAL] Dev-tree R1.1
- * PRODUCTION
- * ===========================================================================
- */
- /* $Id: make_cdr_prods.hpp,v 1000.0 2003/11/18 15:47:20 gouriano Exp $
- * ===========================================================================
- *
- * PUBLIC DOMAIN NOTICE
- * National Center for Biotechnology Information
- *
- * This software/database is a "United States Government Work" under the
- * terms of the United States Copyright Act. It was written as part of
- * the author's official duties as a United States Government employee and
- * thus cannot be copyrighted. This software/database is freely available
- * to the public for use. The National Library of Medicine and the U.S.
- * Government have not placed any restriction on its use or reproduction.
- *
- * Although all reasonable efforts have been taken to ensure the accuracy
- * and reliability of the software and data, the NLM and the U.S.
- * Government do not and cannot warrant the performance or results that
- * may be obtained by using this software or data. The NLM and the U.S.
- * Government disclaim all warranties, express or implied, including
- * warranties of performance, merchantability or fitness for any particular
- * purpose.
- *
- * Please cite the author in any work or product based on this material.
- *
- * ===========================================================================
- *
- * Authors: Josh Cherry
- *
- * File Description:
- *
- */
- #ifndef ALGO_SEQUENCE___MAKE_CDR_PRODS__HPP
- #define ALGO_SEQUENCE___MAKE_CDR_PRODS__HPP
- #include <objects/seq/Seq_annot.hpp>
- #include <objects/seqset/Bioseq_set.hpp>
- #include <objmgr/bioseq_handle.hpp>
- BEGIN_NCBI_SCOPE
- class NCBI_XALGOSEQ_EXPORT CMakeCdrProds
- {
- public:
- /// Given an annot containing a feature table with Cdregions,
- /// translate those without products. Make sequence entries
- /// for translation products (returned as a Bioseq_set)
- /// and adjust the Cdregion features to point at them.
- static CRef<objects::CBioseq_set>
- MakeCdrProds(CRef<objects::CSeq_annot> annot,
- objects::CBioseq_Handle handle);
- private:
- static CAtomicCounter sm_Counter;
- };
- END_NCBI_SCOPE
- #endif // ALGO_SEQUENCE___MAKE_CDR_PRODS__HPP
- /*
- * ===========================================================================
- * $Log: make_cdr_prods.hpp,v $
- * Revision 1000.0 2003/11/18 15:47:20 gouriano
- * PRODUCTION: IMPORTED [ORIGINAL] Dev-tree R1.1
- *
- * Revision 1.1 2003/11/10 16:37:06 jcherry
- * Initial version
- *
- * ===========================================================================
- */