English
- /*
- * ===========================================================================
- * PRODUCTION $Log: rpstblastn_options.hpp,v $
- * PRODUCTION Revision 1000.1 2004/06/01 18:03:08 gouriano
- * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.3
- * PRODUCTION
- * ===========================================================================
- */
- #ifndef ALGO_BLAST_API___RPSTBLASTN_OPTIONS__HPP
- #define ALGO_BLAST_API___RPSTBLASTN_OPTIONS__HPP
- /* $Id: rpstblastn_options.hpp,v 1000.1 2004/06/01 18:03:08 gouriano Exp $
- * ===========================================================================
- *
- * PUBLIC DOMAIN NOTICE
- * National Center for Biotechnology Information
- *
- * This software/database is a "United States Government Work" under the
- * terms of the United States Copyright Act. It was written as part of
- * the author's official duties as a United States Government employee and
- * thus cannot be copyrighted. This software/database is freely available
- * to the public for use. The National Library of Medicine and the U.S.
- * Government have not placed any restriction on its use or reproduction.
- *
- * Although all reasonable efforts have been taken to ensure the accuracy
- * and reliability of the software and data, the NLM and the U.S.
- * Government do not and cannot warrant the performance or results that
- * may be obtained by using this software or data. The NLM and the U.S.
- * Government disclaim all warranties, express or implied, including
- * warranties of performance, merchantability or fitness for any particular
- * purpose.
- *
- * Please cite the author in any work or product based on this material.
- *
- * ===========================================================================
- *
- * Authors: Jason Papadopoulos
- *
- */
- /// @file rpstblastn_options.hpp
- /// Declares the CRPSTBlastnOptionsHandle class.
- #include <algo/blast/api/blast_rps_options.hpp>
- /** @addtogroup AlgoBlast
- *
- * @{
- */
- BEGIN_NCBI_SCOPE
- BEGIN_SCOPE(blast)
- /// Handle to the options for translated nucleotide-RPS blast
- ///
- /// Adapter class for translated nucleotide - RPS BLAST searches.
- /// Exposes an interface to allow manipulation the options that are relevant to
- /// this type of search.
- class NCBI_XBLAST_EXPORT CRPSTBlastnOptionsHandle :
- public CBlastRPSOptionsHandle
- {
- public:
- /// Creates object with default options set
- CRPSTBlastnOptionsHandle(EAPILocality locality = CBlastOptions::eLocal);
- ~CRPSTBlastnOptionsHandle() {}
- /******************* Subject sequence options *******************/
- int GetDbGeneticCode() const {
- return m_Opts->GetDbGeneticCode();
- }
- void SetDbGeneticCode(int gc) {
- m_Opts->SetDbGeneticCode(gc);
- }
- protected:
- void SetSubjectSequenceOptionsDefaults();
- private:
- CRPSTBlastnOptionsHandle(const CRPSTBlastnOptionsHandle& rhs);
- CRPSTBlastnOptionsHandle& operator=(const CRPSTBlastnOptionsHandle& rhs);
- };
- END_SCOPE(blast)
- END_NCBI_SCOPE
- /* @} */
- /*
- * =======================================================================
- * $Log: rpstblastn_options.hpp,v $
- * Revision 1000.1 2004/06/01 18:03:08 gouriano
- * PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.3
- *
- * Revision 1.3 2004/05/04 13:09:20 camacho
- * Made copy-ctor & assignment operator private
- *
- * Revision 1.2 2004/04/23 13:55:47 papadopo
- * derived from BlastRPSOptionsHandle
- *
- * Revision 1.1 2004/04/16 14:08:30 papadopo
- * options handle for translated RPS blast
- *
- * =======================================================================
- */
- #endif /* ALGO_BLAST_API___RPSTBLASTN_OPTIONS__HPP */
