link_hsps.h
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- /*
- * ===========================================================================
- * PRODUCTION $Log: link_hsps.h,v $
- * PRODUCTION Revision 1000.2 2004/06/01 18:04:09 gouriano
- * PRODUCTION PRODUCTION: UPGRADED [GCC34_MSVC7] Dev-tree R1.10
- * PRODUCTION
- * ===========================================================================
- */
- /* $Id: link_hsps.h,v 1000.2 2004/06/01 18:04:09 gouriano Exp $
- * ===========================================================================
- *
- * PUBLIC DOMAIN NOTICE
- * National Center for Biotechnology Information
- *
- * This software/database is a "United States Government Work" under the
- * terms of the United States Copyright Act. It was written as part of
- * the author's offical duties as a United States Government employee and
- * thus cannot be copyrighted. This software/database is freely available
- * to the public for use. The National Library of Medicine and the U.S.
- * Government have not placed any restriction on its use or reproduction.
- *
- * Although all reasonable efforts have been taken to ensure the accuracy
- * and reliability of the software and data, the NLM and the U.S.
- * Government do not and cannot warrant the performance or results that
- * may be obtained by using this software or data. The NLM and the U.S.
- * Government disclaim all warranties, express or implied, including
- * warranties of performance, merchantability or fitness for any particular
- * purpose.
- *
- * Please cite the author in any work or product based on this material.
- *
- * ===========================================================================
- *
- * Author: Ilya Dondoshansky
- *
- */
- /** @file link_hsps.h
- * Functions to link HSPs using sum statistics
- */
- #ifndef __LINK_HSPS__
- #define __LINK_HSPS__
- #ifdef __cplusplus
- extern "C" {
- #endif
- #include <algo/blast/core/blast_hits.h>
- /** Link HSPs using sum statistics.
- * @param program_number BLAST program [in]
- * @param hsp_list List of HSPs [in]
- * @param query_info Query information block [in]
- * @param subject Subject sequence block [in]
- * @param sbp Scoring and statistical data [in]
- * @param hit_params Hit saving parameters [in]
- * @param gapped_calculation Is this a gapped search? [in]
- */
- Int2
- BLAST_LinkHsps(Uint1 program_number, BlastHSPList* hsp_list,
- BlastQueryInfo* query_info, BLAST_SequenceBlk* subject,
- BlastScoreBlk* sbp, const BlastHitSavingParameters* hit_params,
- Boolean gapped_calculation);
- #ifdef __cplusplus
- }
- #endif
- #endif /* !__LINK_HSPS__ */