English
资源说明：Reverse translate a Profam-like protein motif
revtrans-motif
==============
Reverse translate a Profam-like protein motif
---------------------------------------------
This script takes a protein motif as input and returns a degenerate
oligonucleotide sequence corresponding to it. The main reason for doing this
is to design degenerate primers that amplify a given sequence pattern.
The input motif consists of a string of one-letter residues, with any of
the following syntactic elements:
* `[...]`: **Redundant position.**
A position in which more than one residue is allowed. Example:
[TS]YW[RKSD]
^^ ^^^^
* `[^...]`: **Negated position.**
A position in which any residue is allowed, saved for those between
brackets. Example:
[^PW]MK[LAE]
^^
* `(...){n,m,...}`: **Repeated motif.**
A motif that is repeated **n** or **m** times. It can have any of the previous
syntactic elements. Example:
A[SN]C(TXX){2,4,8}
^^^
The allowed letters are those that correspond to the 20 natural aminoacids,
plus:
B = N + D
Z = Q + E
X = All
### Dependencies
This module depends on the following:
- Test::More
- List::MoreUtils
- Bio::Tools::CodonTable
- Bio::Seq
- Pod::Usage
- Getopt::Long
- Sub::Exporter
### Installation
To install this module, run the following commands:
perl Makefile.PL
make
make test
make install
### Support and Documentation
After installing, you can find documentation for this module with the
perldoc command.
perldoc revtrans-motif
### Copyright and Licence
Copyright (C) 2009 **Bruno Vecchi**
This program is free software; you can redistribute it and/or modify it
under the same terms as Perl itself.
本源码包内暂不包含可直接显示的源代码文件，请下载源码包。
