资源说明:A simple python module for running tasks in parallel (SMP or local network connected computers)
runlib ====== Some python utility tools for massively parallel processing and data handling. 1. Installation -------------- This module can be installed with pip from the git repository: pip install --no-deps git+http://git@github.com/fsteinmetz/runlib.git 2. condor.py ------------ A simple python interface to massively parallel computing frameworks. Initially developped for [HTCondor](http://research.cs.wisc.edu/htcondor/) ; it has been extended to support Sun Grid Engine (qsub). _Example:_ from condor import CondorPool # or QsubPool def f(x): return x**2 if __name__ == '__main__': p = CondorPool() results = p.map(f, range(5)) 3. tmpfiles.py -------------- Management of temporary files: inputs to a processing (TmpManager().input), outputs of a processing (TmpManager().output), pure temporary files (TmpManager().file) and temporary directories (TmpManager().directory). Includes several features: cleanup after use, automatic uncompress of input files (gz, bz, tar, zip), check disck space, unique paths, etc. _Example:_ with TmpManager('/tmp/') as tm: # instantiate the tmp manager on directory '/tmp/' # decompress a file to tmp directory and return the name # of the decompressed file input1 = tm.input('/data/file.gz') # if the input is an archive, returns a list of all the files in # the archive file_list = tm.input('/data/file.tar.gz') # returns a temporary file that will be cleaned up tmp = tm.file('filename.txt') # returns a temporary directory dir = tm.directory() # returns a filename in tmp directory # this file will be created afterwards, and moved to destination # upon commit() out = tm.output('/data/result.dat') # move all output files to their destination # (otherwise they are cleared) tm.commit() # NOTE: all temporary files are cleared up when leaving the 'with' context # even in case of error in the python code.
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